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2005 Publications

Boorsma A, Foat BC, Vis D, Klis F, Bussemaker H.  2005.  T-profiler: scoring the activity of predefined groups of genes using gene expression data. Nucleic Acids Res. 33(Web Server issue):W592-5. Go to Pubmed
Cavelier G, Anastassiou D.  2005.  Phenotype analysis using network motifs derived from changes in regulatory network dynamics. Proteins. 60(3):525-46. Go to Pubmed
Chen CPeter, Posy S, Ben-Shaul A, Shapiro L, Honig B.  2005.  Specificity of cell-cell adhesion by classical cadherins: Critical role for low-affinity dimerization through beta-strand swapping. Proc Natl Acad Sci U S A. 102(24):8531-6. Go to Pubmed
Weston J, Leslie C, Ie E, Zhou D, Elisseeff A, Noble WStafford.  2005.  Semi-supervised protein classification using cluster kernels. Bioinformatics. 21(15):3241-7. Go to Pubmed
Punta M, Rost B.  2005.  PROFcon: novel prediction of long-range contacts. Bioinformatics. 21(13):2960-8. Go to Pubmed
Alarcón M, Yonan AL, Gilliam TC, Cantor R, Geschwind DH.  2005.  Quantitative genome scan and Ordered-Subsets Analysis of autism endophenotypes support language QTLs. Mol Psychiatry. 10(8):747-57. Go to Pubmed
Fan H, Mark AE, Zhu J, Honig B.  2005.  Comparative study of generalized Born models: protein dynamics. Proc Natl Acad Sci U S A. 102(19):6760-4. Go to Pubmed
Nair R, Rost B.  2005.  Mimicking cellular sorting improves prediction of subcellular localization. J Mol Biol. 348(1):85-100. Go to Pubmed
Basso K, Margolin A, Stolovitzky G, Klein U, Dalla-Favera R, Califano A.  2005.  Reverse engineering of regulatory networks in human B cells. Nat Genet. 37(4):382-90. Go to Pubmed
Cantor MN, Sarkar INeil, Bodenreider O, Lussier Y.  2005.  Genestrace: phenomic knowledge discovery via structured terminology. Pac Symp Biocomput. :103-14. Go to Pubmed
Siggers TW, Silkov A, Honig B.  2005.  Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity. J Mol Biol. 345(5):1027-45. Go to Pubmed
Tao Y, Friedman C, Lussier Y.  2005.  Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics. 21(8):1659-67. Go to Pubmed