ADOMETA
Lead Investigator(s) Dennis Vitkup
A bioinformatics resource designed to predict genes for orphan metabolic activities — known biochemical activities not currently assigned to genes in some or all organisms.
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CIMS
Lead Investigator(s) Chaolin Zhang
A computational method for HITS-CLIP data analysis to determine the exact protein-RNA crosslink sites and thereby map protein-RNA interactions at single-nucleotide resolution.
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FeatureREDUCE
Lead Investigator(s) Harmen Bussemaker
Quantifies relative protein-NA binding affinities using sequence and structural features.
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mCarts
Lead Investigator(s) Chaolin Zhang
A hidden Markov model (HMM)-based method for predicting clusters of RNA motif sites.
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mRIN
Lead Investigator(s) Chaolin Zhang
A method for assessing a quantitative measure of mRNA integrity directly from RNA-seq data.
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OLego
Lead Investigator(s) Chaolin Zhang
A program for de novo spliced mapping of mRNA-seq reads.
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OnTheFly
Lead Investigator(s) Barry Honig, Richard Mann
A database of Drosophila melanogaster transcription factors and their binding sites.
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Quantas
Lead Investigator(s) Chaolin Zhang
A pipeline for analysing alternative splicing using RNA-seq.
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SPLASH
Lead Investigator(s) Andrea Califano
A deterministic pattern discovery algorithm that can find sparse amino or nucleic acid patterns matching identically or similarly in a set of protein or DNA sequences.
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Target Explorer
Lead Investigator(s) Barry Honig, Richard Mann
Automates the process of predicting the complex regulatory elements for a specified set of transcription factors in the Drosophila melanogaster genome.
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