Search Publications

Yang K-A, Pei R, Stojanovic MN.  2016.  In vitro selection and amplification protocols for isolation of aptameric sensors for small molecules. Methods. Go to Pubmed
Lachmann A, Giorgi FM, Alvarez MJ, Califano A.  2016.  Detection and removal of spatial bias in multiwell assays. Bioinformatics. Go to Pubmed
Lachmann A, Giorgi FM, Lopez G, Califano A.  2016.  ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information. Bioinformatics. 32(14):2233-5. Go to Pubmed
Paganin M, Buldini B, Germano G, Seganfreddo E, di Meglio A, Magrin E, Grillo F, Pigazzi M, Rizzari C, Cazzaniga G et al.  2016.  A Case of T-cell Acute Lymphoblastic Leukemia Relapsed As Myeloid Acute Leukemia. Pediatr Blood Cancer. Go to Pubmed
Oren-Suissa M, Bayer EA, Hobert O.  2016.  Sex-specific pruning of neuronal synapses in Caenorhabditis elegans. Nature. Go to Pubmed
Moorjani P, Sankararaman S, Fu Q, Przeworski M, Patterson N, Reich D.  2016.  A genetic method for dating ancient genomes provides a direct estimate of human generation interval in the last 45,000 years. Proc Natl Acad Sci U S A. Go to Pubmed
Hobert O.  2016.  A map of terminal regulators of neuronal identity in Caenorhabditis elegans. Wiley Interdiscip Rev Dev Biol. Go to Pubmed
Setty M, Tadmor MD, Reich-Zeliger S, Angel O, Salame TMeir, Kathail P, Choi K, Bendall S, Friedman N, Pe'er D.  2016.  Wishbone identifies bifurcating developmental trajectories from single-cell data. Nat Biotechnol. Go to Pubmed
Utrilla J, O'Brien EJ, Chen K, McCloskey D, Cheung J, Wang H, Armenta-Medina D, Feist AM, Palsson BO.  2016.  Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution. Cell Syst. 2(4):260-71. Go to Pubmed
Kushwaha R, Jagadish N, Kustagi M, Mendiratta G, Seandel M, Soni R, Korkola JE, Thodima V, Califano A, Bosl GJ et al.  2016.  Mechanism and Role of SOX2 Repression in Seminoma: Relevance to Human Germline Specification. Stem Cell Reports. Go to Pubmed
Willems T, Gymrek M, G Poznik D, Tyler-Smith C, Erlich, iv Y.  2016.  Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates. Am J Hum Genet. Go to Pubmed
Toivanen R, Mohan A, Shen MM.  2016.  Basal Progenitors Contribute to Repair of the Prostate Epithelium Following Induced Luminal Anoikis. Stem Cell Reports. Go to Pubmed
Kaartokallio T, A Lokki I, Peterson H, Kivinen K, Hiltunen L, Salmela E, Lappalainen T, Maanselkä P, Heino S, Knuutila S et al.  2016.  Preeclampsia does not share common risk alleles in 9p21 with coronary artery disease and type 2 diabetes. Ann Med. :1-7. Go to Pubmed
G Poznik D, Xue Y, Mendez FL, Willems TF, Massaia A, Sayres MAWilson, Ayub Q, McCarthy SA, Narechania A, Kashin S et al.  2016.  Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nat Genet. Go to Pubmed
Yang S, Carmi S, Pe'er I.  2016.  Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. J Comput Biol. Go to Pubmed
Gomes ALC, Wang HH.  2016.  The Role of Genome Accessibility in Transcription Factor Binding in Bacteria. PLoS Comput Biol. 12(4):e1004891. Go to Pubmed
Lao Y-H, Chi C-W, Friedrich SM, Peck K, Wang T-H, Leong KW, Chen L-C.  2016.  Signal-On Protein Detection via Dye Translocation between Aptamer and Quantum Dot. ACS Appl Mater Interfaces. Go to Pubmed
Beck DB, Cho MT, Millan F, Yates C, Hannibal M, O'Connor B, Shinawi M, Connolly AM, Waggoner D, Halbach S et al.  2016.  A recurrent de novo CTBP1 mutation is associated with developmental delay, hypotonia, ataxia, and tooth enamel defects. Neurogenetics. Go to Pubmed
Wang S, Xu Y, Chan HFai, Kim H-W, Wang Y, Leong KW, Chen M.  2016.  phicaNanoparticle-mediated inhibition of survivin to overcome drug resistance in cancer therapy. J Control Release. Go to Pubmed
Johns NI, Blazejewski T, Gomes ALc, Wang HH.  2016.  Principles for designing synthetic microbial communities. Curr Opin Microbiol. 31:146-153. Go to Pubmed
Allen GI, Amoroso N, Anghel C, Balagurusamy V, Bare CJ, Beaton D, Bellotti R, Bennett DA, Boehme K, Boutros PC et al.  2016.  Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimers Dement. Go to Pubmed
Merabet S, Mann RS.  2016.  To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins. Trends Genet. Go to Pubmed
Mason RD, Welles HC, Adams C, Chakrabarti BK, Gorman J, Zhou T, Nguyen R, O'Dell S, Lusvarghi S, Bewley CA et al.  2016.  Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability. PLoS Pathog. 12(4):e1005537. Go to Pubmed
Quilez J, Guilmatre A, Garg P, Highnam G, Gymrek M, Erlich, iv Y, Joshi RS, Mittelman D, Sharp AJ.  2016.  Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans. Nucleic Acids Res. Go to Pubmed
Patro R, Norel R, Prill RJ, Saez-Rodriguez J, Lorenz P, Steinbeck F, Ziems B, Luštrek M, Barbarini N, Tiengo A et al.  2016.  A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. BMC Bioinformatics. 17:155. Go to Pubmed
C Westphalen B, Takemoto Y, Tanaka T, Macchini M, Jiang Z, Renz BW, Chen X, Ormanns S, Nagar K, Tailor Y et al.  2016.  Dclk1 Defines Quiescent Pancreatic Progenitors that Promote Injury-Induced Regeneration and Tumorigenesis. Cell Stem Cell. 18(4):441-55. Go to Pubmed
Zaaijer S, Erlich, iv Y.  2016.  Using mobile sequencers in an academic classroom. Elife. 5 Go to Pubmed
Park M-J, Sheng R, Silkov A, Jung D-J, Wang Z-G, Xin Y, Kim H, Thiagarajan-Rosenkranz P, Song S, Yoon Y et al.  2016.  SH2 Domains Serve as Lipid-Binding Modules for pTyr-Signaling Proteins. Mol Cell. 62(1):7-20. Go to Pubmed
Chan HFai, Ma S, Leong KW.  2016.  Can microfluidics address biomanufacturing challenges in drug/gene/cell therapies? Regen Biomater. 3(2):87-98. Go to Pubmed
Peters EB, Christoforou N, Leong KW, Truskey GA, West JL.  2016.  Poly(ethylene glycol) Hydrogel Scaffolds Containing Cell-Adhesive and Protease-Sensitive Peptides Support Microvessel Formation by Endothelial Progenitor Cells. Cell Mol Bioeng. 9(1):38-54. Go to Pubmed
Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W et al.  2016.  Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J. Go to Pubmed
Nissim N, Boland MRegina, Tatonetti NP, Elovici Y, Hripcsak G, Shahar Y, Moskovitch R.  2016.  Improving Condition Severity Classification with an Efficient Active Learning Based Framework. J Biomed Inform. Go to Pubmed
Lescarbeau RS, Lei L, Bakken KK, Sims PA, Sarkaria JN, Canoll P, White FM.  2016.  Quantitative phosphoproteomics reveals Wee1 kinase as a therapeutic target in a model of proneural glioblastoma. Mol Cancer Ther. Go to Pubmed
van Mourik PM, de Jong J, Agpalo D, Claussin C, Rothstein R, Chang M.  2016.  Recombination-Mediated Telomere Maintenance in Saccharomyces cerevisiae Is Not Dependent on the Shu Complex. PLoS One. 11(3):e0151314. Go to Pubmed
Hobert O.  2016.  Terminal Selectors of Neuronal Identity. Curr Top Dev Biol. 116:455-75. Go to Pubmed
Fazlollahi M, Muroff I, Lee E, Causton HC, Bussemaker HJ.  2016.  Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets. Proc Natl Acad Sci U S A. Go to Pubmed
Weyn-Vanhentenryck SM, Zhang C.  2016.  mCarts: Genome-Wide Prediction of Clustered Sequence Motifs as Binding Sites for RNA-Binding Proteins. Methods Mol Biol. 1421:215-26. Go to Pubmed
Nicoletti P, Werk AN, Sawle A, Shen Y, Urban TJ, Coulthard SA, Bjornsson ES, Cascorbi I, Floratos A, Stammschulte T et al.  2016.  HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury. Pharmacogenet Genomics. 26(5):218-24. Go to Pubmed
Nida H, Blum S, Zielinski D, Srivastava DA, Elbaum R, Xin Z, Erlich, iv Y, Fridman E, Shental N.  2016.  Highly efficient de novo mutant identification in a Sorghum bicolor TILLING population using the ComSeq approach. Plant J. Go to Pubmed
Polubriaginof F, Tatonetti NP, Vawdrey DK.  2015.  An Assessment of Family History Information Captured in an Electronic Health Record. AMIA Annu Symp Proc. 2015:2035-42. Go to Pubmed
Voutev R, Mann RS.  2016.  Streamlined scanning for enhancer elements in Drosophila melanogaster. Biotechniques. 60(3):141-4. Go to Pubmed
Hoffman KB, Dimbil M, Tatonetti NP, Kyle RF.  2016.  A Pharmacovigilance Signaling System Based on FDA Regulatory Action and Post-Marketing Adverse Event Reports. Drug Saf. Go to Pubmed
Huang S, Lee AJisu, Tsoi R, Wu F, Zhang Y, Leong KW, You L.  2016.  Coupling spatial segregation with synthetic circuits to control bacterial survival. Mol Syst Biol. 12(2):859. Go to Pubmed
Sheth RU, Cabral V, Chen SP, Wang HH.  2016.  Manipulating Bacterial Communities by in situ Microbiome Engineering. Trends Genet. Go to Pubmed
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK et al.  2016.  Inferring causal molecular networks: empirical assessment through a community-based effort. Nat Methods. 13(4):310-8. Go to Pubmed
Le Magnen C, Dutta A, Abate-Shen C.  2016.  Optimizing mouse models for precision cancer prevention. Nat Rev Cancer. Go to Pubmed
Santanam U, Banach-Petrosky W, Abate-Shen C, Shen MM, White E, DiPaola RS.  2016.  Atg7 cooperates with Pten loss to drive prostate cancer tumor growth. Genes Dev. 30(4):399-407. Go to Pubmed
Messina M, Chiaretti S, Wang J, Fedullo ALucia, Peragine N, Gianfelici V, Piciocchi A, Brugnoletti F, Di Giacomo F, Pauselli S et al.  2016.  Prognostic and therapeutic role of targetable lesions in B-lineage acute lymphoblastic leukemia without recurrent fusion genes. Oncotarget. Go to Pubmed
Ji HY, Atchison L, Chen Z, Chakraborty S, Jung Y, Truskey GA, Christoforou N, Leong KW.  2016.  Transdifferentiation of human endothelial progenitors into smooth muscle cells. Biomaterials. 85:180-94. Go to Pubmed
Lorberbaum T, Sampson KJ, Woosley RL, Kass RS, Tatonetti NP.  2016.  An Integrative Data Science Pipeline to Identify Novel Drug Interactions that Prolong the QT Interval. Drug Saf. Go to Pubmed
Shimada K, Hayano M, Pagano NC, Stockwell BR.  2016.  Cell-Line Selectivity Improves the Predictive Power of Pharmacogenomic Analyses and Helps Identify NADPH as Biomarker for Ferroptosis Sensitivity. Cell Chem Biol. Go to Pubmed
Ceccarelli M, Barthel FP, Malta TM, Sabedot TS, Salama SR, Murray BA, Morozova O, Newton Y, Radenbaugh A, Pagnotta SM et al.  2016.  Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma. Cell. 164(3):550-63. Go to Pubmed
Mann RS, Howard CE.  2016.  The Importance of Timing. Cell. 164(3):347-8. Go to Pubmed
Rasi S, Khiabanian H, Ciardullo C, Terzi-di-Bergamo L, Monti S, Spina V, Bruscaggin A, Cerri M, Deambrogi C, Martuscelli L et al.  2016.  Clinical impact of small subclasses harboring NOTCH1, SF3B1 or BIRC3 mutations in chronic lymphocytic leukemia. Haematologica. Go to Pubmed
Amster G, Sella G.  2016.  Life history effects on the molecular clock of autosomes and sex chromosomes. Proc Natl Acad Sci U S A. 113(6):1588-93. Go to Pubmed
Howell K, Hobert O.  2016.  Small Immunoglobulin Domain Proteins at Synapses and the Maintenance of Neuronal Features. Neuron. 89(2):239-41. Go to Pubmed
Ribas A, Shin DSanghoon, Zaretsky J, Frederiksen J, Cornish A, Avramis E, Seja E, Kivork C, Siebert J, Kaplan-Lefko P et al.  2016.  PD-1 blockade expands intratumoral T memory cells. Cancer Immunol Res. Go to Pubmed
Manrai AK, Patel CJ, Gehlenborg N, Tatonetti NP, Ioannidis JPA, Kohane IS.  2016.  Methods to enhance the reproducibility of precision medicine Pac Symp Biocomput. 21:180-2. Go to Pubmed
Conrad M, Angeli JPedro Frie, Vandenabeele P, Stockwell BR.  2016.  Regulated necrosis: disease relevance and therapeutic opportunities. Nat Rev Drug Discov. Go to Pubmed
Marcotte R, Sayad A, Brown KR, Sanchez-Garcia F, Reimand J, Haider M, Virtanen C, Bradner JE, Bader GD, Mills GB et al.  2016.  Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance. Cell. 164(1-2):293-309. Go to Pubmed
Sepulveda JL, Gutierrez-Pajares JL, Luna A, Yao Y, Tobias JW, Thomas S, Woo Y, Giorgi F, Komissarova EV, Califano A et al.  2016.  High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing. Mod Pathol. Go to Pubmed
Gao Z, Wyman MJ, Sella G, Przeworski M.  2016.  Interpreting the Dependence of Mutation Rates on Age and Time. PLoS Biol. 14(1):e1002355. Go to Pubmed
DeWolf S, Shen Y, Sykes M.  2016.  A New Window into the Human Alloresponse. Transplantation. Go to Pubmed
Lee SBae, Frattini V, Bansal M, Castano AM, Sherman D, Hutchinson K, Bruce JN, Califano A, Liu G, Cardozo T et al.  2016.  An ID2-dependent mechanism for VHL inactivation in cancer. Nature. 529(7585):172-7. Go to Pubmed
Ardiccioni C, Clarke OB, Tomasek D, Issa HA, von Alpen DC, Pond HL, Banerjee S, Rajashankar KR, Liu Q, Guan Z et al.  2016.  Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis. Nat Commun. 7:10175. Go to Pubmed
Amato T, Abate F, Piccaluga P, Iacono M, Fallerini C, Renieri A, De Falco G, Ambrosio MRaffaella, Mourmouras V, Ogwang M et al.  2016.  Clonality Analysis of Immunoglobulin Gene Rearrangement by Next-Generation Sequencing in Endemic Burkitt Lymphoma Suggests Antigen Drive Activation of BCR as Opposed to Sporadic Burkitt Lymphoma. Am J Clin Pathol. 145(1):116-27. Go to Pubmed
Gallego-Perez D, Otero JJ, Czeisler C, Ma J, Ortiz C, Gygli P, Catacutan FPatsy, Gokozan HNuman, Cowgill A, Sherwood T et al.  2015.  Deterministic transfection drives efficient nonviral reprogramming and uncovers reprogramming barriers. Nanomedicine. Go to Pubmed
Lorden ER, Miller KJ, Ibrahim MM, Bashirov L, Hammett E, Chakraborty S, Quiles-Torres C, M Selim A, Leong KW, Levinson H.  2016.  Biostable electrospun microfibrous scaffolds mitigate hypertrophic scar contraction in an immune-competent murine model. Acta Biomater. 32:100-9. Go to Pubmed
Pereira L, Kratsios P, Serrano-Saiz E, Sheftel H, Mayo AE, Hall DH, White JG, LeBoeuf B, L Garcia R, Alon U et al.  2015.  A cellular and regulatory map of the cholinergic nervous system of C.elegans. Elife. 4 Go to Pubmed
Hart MP, Hobert O.  2015.  Sexual Dimorphism: Mystery Neurons Control Sex-Specific Behavioral Plasticity. Curr Biol. 25(24):R1170-2. Go to Pubmed
Riley TR, Lazarovici A, Mann RS, Bussemaker HJ.  2015.  Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE. Elife. 4 Go to Pubmed
Gorman J, Soto C, Yang MM, Davenport TM, Guttman M, Bailer RT, Chambers M, Chuang G-Y, DeKosky BJ, Doria-Rose NA et al.  2016.  Structures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design. Nat Struct Mol Biol. 23(1):81-90. Go to Pubmed
Hoffman KB, Dimbil M, Kyle RF, Tatonetti NP, Erdman CB, Demakas A, Chen D, Overstreet BM.  2015.  A Drug Safety Rating System Based on Postmarketing Costs Associated with Adverse Events and Patient Outcomes. J Manag Care Spec Pharm. 21(12):1134-43. Go to Pubmed
Zhang H, Zheng T, Chua CWai, Shen M, Gelmann EP.  2015.  Nkx3.1 controls the DNA repair response in the mouse prostate. Prostate. Go to Pubmed
Yang WSeok, Stockwell BR.  2015.  Ferroptosis: Death by Lipid Peroxidation. Trends Cell Biol. Go to Pubmed
Khare A, Tavazoie S.  2015.  Multifactorial Competition and Resistance in a Two-Species Bacterial System. PLoS Genet. 11(12):e1005715. Go to Pubmed
Lee AK, Kulcsar KA, Elliott O, Khiabanian H, Nagle ER, Jones MEB, Amman BR, Sanchez-Lockhart M, Towner JS, Palacios G et al.  2015.  De novo transcriptome reconstruction and annotation of the Egyptian rousette bat. BMC Genomics. 16:1033. Go to Pubmed
Putcha P, Yu J, Rodriguez-Barrueco R, Saucedo-Cuevas L, Villagrasa P, Murga-Penas E, Quayle SN, Yang M, Castro V, Llobet-Navas D et al.  2015.  HDAC6 activity is a non-oncogene addiction hub for inflammatory breast cancers. Breast Cancer Res. 17(1):149. Go to Pubmed
Gymrek M, Willems T, Guilmatre A, Zeng H, Markus B, Georgiev S, Daly MJ, Price AL, Pritchard JK, Sharp AJ et al.  2015.  Abundant contribution of short tandem repeats to gene expression variation in humans. Nat Genet. Go to Pubmed
Shen MM.  2015.  Illuminating the Properties of Prostate Luminal Progenitors. Cell Stem Cell. 17(6):644-6. Go to Pubmed
Morton ER, Lynch J, Froment A, Lafosse S, Heyer E, Przeworski M, Blekhman R, Segurel L.  2015.  Variation in Rural African Gut Microbiota Is Strongly Correlated with Colonization by Entamoeba and Subsistence. PLoS Genet. 11(11):e1005658. Go to Pubmed
Kidd BA, Wroblewska A, Boland MR, Agudo J, Merad M, Tatonetti NP, Brown BD, Dudley JT.  2015.  Mapping the effects of drugs on the immune system. Nat Biotechnol. Go to Pubmed
Romano JD, Tatonetti NP.  2015.  VenomKB, a new knowledge base for facilitating the validation of putative venom therapies. Sci Data. 2:150065. Go to Pubmed
Del Giudice I, Marinelli M, Wang J, Bonina S, Messina M, Chiaretti S, Ilari C, Cafforio L, Raponi S, Mauro FR et al.  2015.  Inter- and intra-patient clonal and subclonal heterogeneity of chronic lymphocytic leukaemia: evidences from circulating and lymph nodal compartments. Br J Haematol. Go to Pubmed
Arlotta P, Hobert O.  2015.  Homeotic Transformations of Neuronal Cell Identities. Trends Neurosci. Go to Pubmed
Bisikirska B, Bansal M, Shen Y, Teruya-Feldstein J, Chaganti R, Califano A.  2015.  Elucidation and pharmacological targeting of novel molecular drivers of follicular lymphoma progression. Cancer Res. Go to Pubmed
Singhal S, Leffler EM, Sannareddy K, Turner I, Venn O, Hooper DM, Strand AI, Li Q, Raney B, Balakrishnan CN et al.  2015.  Stable recombination hotspots in birds. Science. 350(6263):928-32. Go to Pubmed
Palamara PFrancesco, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S, Sunyaev SR, de Bakker PIW, Wakeley J et al.  2015.  Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates. Am J Hum Genet. Go to Pubmed
Almeida ACarolina d, Abate F, Khiabanian H, Martinez-Escala E, Guitart J, Tensen CP, Vermeer MH, Rabadan R, Ferrando A, Palomero T.  2015.  The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome. Nat Genet. Go to Pubmed
Sun J, Wang J, Pefanis E, Chao J, Rothschild G, Tachibana I, Chen JKui, Ivanov II, Rabadan R, Takeda Y et al.  2015.  Transcriptomics Identify CD9 as a Marker of Murine IL-10-Competent Regulatory B Cells. Cell Rep. Go to Pubmed
Clarke OB, Tomasek D, Jorge CD, Dufrisne MBelcher, Kim M, Banerjee S, Rajashankar KR, Shapiro L, Hendrickson WA, Santos H et al.  2015.  Structural basis for phosphatidylinositol-phosphate biosynthesis. Nat Commun. 6:8505. Go to Pubmed
Liu X, Hernandez N, Kisselev S, Floratos A, Sawle A, Ionita-Laza I, Ottman R, Louis ED, Clark LN.  2015.  Identification of candidate genes for familial early-onset essential tremor. Eur J Hum Genet. Go to Pubmed
Lee SHyung, Shen MM.  2015.  Cell types of origin for prostate cancer. Curr Opin Cell Biol. 37:35-41. Go to Pubmed
Pivovarov R, Perotte AJ, Grave E, Angiolillo J, Wiggins CH, Elhadad N.  2015.  Learning probabilistic phenotypes from heterogeneous EHR data. J Biomed Inform. Go to Pubmed
Jung Y, Ji HY, Chen Z, Chan HFai, Atchison L, Klitzman B, Truskey G, Leong KW.  2015.  Scaffold-free, Human Mesenchymal Stem Cell-Based Tissue Engineered Blood Vessels. Sci Rep. 5:15116. Go to Pubmed
Jacunski A, Dixon SJ, Tatonetti NP.  2015.  Connectivity Homology Enables Inter-Species Network Models of Synthetic Lethality. PLoS Comput Biol. 11(10):e1004506. Go to Pubmed
Barrows D, Schoenfeld SM, Hodakoski C, Silkov A, Honig B, Couvillon A, Shymanets A, Nuernberg B, Asara JM, Parsons R.  2015.  PAK kinases mediate the phosphorylation of PREX2 to initiate feedback inhibition of Rac1. J Biol Chem. Go to Pubmed
O'Connell NE, Lelli K, Mann RS, Palmer AG.  2015.  Asparagine deamidation reduces DNA-binding affinity of the Drosophila melanogaster Scr homeodomain. FEBS Lett. Go to Pubmed
Klauzinska M, McCurdy D, Rangel C, Vaidyanath A, Castro N, Shen MM, Gonzales M, Bertolette D, Bianco C, Callahan R et al.  2015.  Cripto-1 Ablation Disrupts Alveolar Development in the Mouse Mammary Gland through a Progesterone Receptor-Mediated Pathway. Am J Pathol. Go to Pubmed
Ellis P, Burbridge S, Soubes S, Ohyama K, Ben-Haim N, Chen C, Dale K, Shen MM, Constam D, Placzek M.  2015.  ProNodal acts via FGFR3 to govern duration of Shh expression in the prechordal mesoderm. Development. Go to Pubmed

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