Bias Removal
Lead Investigator(s) Andrea Califano
Two R scripts for removing location biases from a multiwell dataset.
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Camelot
Lead Investigator(s) Dana Pe'er
CAusal Modeling with Expression Linkage for cOmplex Traits (Camelot) provides a framework to both model complex traits and identify the potential underlying causal factors.
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CLEANER
Lead Investigator(s) Mariano Alvarez
An R-system software package for the assembly of informative, transcript-specific probe-clusters for Affymetrix expression microarrays.
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CONEXIC
Lead Investigator(s) Dana Pe'er
COpy Number and EXpression In Cancer (CONEXIC) is an algorithm that integrates matched copy number (amplifications and deletions) and gene expression data from tumor samples to identify driving mutations and the processes they influence.
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Genatomy
Lead Investigator(s) Dana Pe'er
A visualization tool for biological data related to gene expression, genotypes, growth curves, and copy number variation.
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geWorkbench
Lead Investigator(s) Aris Floratos
Provides an integrated suite of genomics tools.
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Inference of Modules Associated with eQTL's
Lead Investigator(s) Itsik Pe'er
A tool for constructing modules regulated by eQTLs using gene expression and SNP variation data across multiple individuals.
Pandora
Lead Investigator(s) Raul Rabadan
A multi-step pipeline for finding pathogen sequences in RNA-seq data.
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Pegasus
Lead Investigator(s) Raul Rabadan
Enables annotation and prediction of oncogenic gene fusions using RNA-seq data.
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T-profiler
Lead Investigator(s) Harmen Bussemaker
A web-based tool that uses the t-test to score changes in the average activity of pre-defined groups of genes.
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TranscriptionDetector
Lead Investigator(s) Harmen Bussemaker
A tool for finding probes that measures significantly expressed loci in a genomic array experiment.
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