MINDy2/CINDY
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MINDy2 is an algorithm for the genome-wide discovery of modulators of transcriptional interactions. It uses a new information theoretic method to identify multivariate statistical dependencies between a transcription factor and one or more of its targets, conditional on the presence (or absence) of a candidate modulator gene.
CINDy is an implementation of MINDy using conditional mutual information.
An algorithm for the genome-wide discovery of modulators of transcriptional interactions.