Khare A, Tavazoie S. Extreme Antibiotic Persistence via Heterogeneity-Generating Mutations Targeting Translation. mSystems. 2020 Jan 21;5(1). pii: e00847-19. doi: 10.1128/mSystems.00847-19.

Vejnar CE, Abdel Messih M, Takacs CM, Yartseva V, Oikonomou P, Christiano R, Stoeckius M, Lau S, Lee MT, Beaudoin JD, Musaev D, Darwich-Codore H, Walther TC, Tavazoie S, Cifuentes D, Giraldez AJ. Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish. Genome Res. 2019 Jul;29(7):1100-1114. doi: 10.1101/gr.245159.118. 

Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S. Systematic discovery of structural elements governing stability of mammalian messenger RNAs. Nature. 2012 Apr 8;485(7397):264-8.

Goodarzi H, Elemento O, Tavazoie S. Revealing global regulatory perturbations across human cancers. Mol Cell. 2009 Dec 11;36(5):900-11.

Goodarzi H, Hottes AK, Tavazoie S. Global discovery of adaptive mutations. Nat Methods. 2009 Aug;6(8):581-3.

Takopoulos I, Liu Y, Tavazoie S. Predictive behavior within microbial genetic networks. Science. 2008 Jun 6;320(5881):1313-7.

Elemento O, Slonim N, Tavazoie S. A universal framework for regulatory element discovery across all genomes and data types. Mol Cell. 2007 Oct 26;28(2):337-50.

Beer MA, Tavazoie S. Predicting gene expression from sequence. Cell. 2004 Apr 16;117(2):185-98.