Oliver Elliott

Overview

Oliver Elliott

Titles

Programmer Analyst

Email
oe2118@columbia.edu

Lab

Raul Rabadan

Oliver Elliott received his BA in physics with honors from Amherst College and worked for a year there after graduation on an experiment to measure the electric dipole moment of an electron. In 2011 he received his master’s in electrical engineering from Columbia University. He is interested in next-generation sequencing technologies, systems biology, and computer science. In collaboration with Vladimir Trifonov, he works on the software pipeline to search for tumor causing mutations in high-throughput sequencing data.

Education History

MS, Columbia University
Electrical Engineering

BA, Amherst College
Physics

Publications

Wang J, Cazzato E, Ladewig E, Frattini V, Rosenbloom DI, Zairis S, Abate F, Liu Z, Elliott O, Shin YJ, Lee JK, Lee IH, Park WY, Eoli M, Blumberg AJ, Lasorella A, Nam DH, Finocchiaro G, Iavarone A, Rabadan R. Clonal evolution of glioblastoma under therapy. Nat Genet. 2016 Jun 6.

Lee AK, Kulcsar KA, Elliott O, Khiabanian H, Nagle ER, Jones ME, Amman BR, Sanchez-Lockhart M, Towner JS, Palacios G, Rabadan R. De novo transcriptome reconstruction and annotation of the Egyptian rousette bat. BMC Genomics. 2015 Dec 7;16:1033.

Pefanis E, Wang J, Rothschild G, Lim J, Kazadi D, Sun J, Federation A, Chao J, Elliott O, Liu ZP, Economides AN, Bradner JE, Rabadan R, Basu U. RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. Cell. 2015 May 7;161(4):774-89.

Lee A, Khiabanian H, Kugelman J, Elliott O, Nagle E, Yu GY, Warren T, Palacios G, Rabadan R. Transcriptome reconstruction and annotation of cynomolgus and African green monkey. BMC Genomics. 2014 Oct 3;15(1):846.

Tiacci E, Trifonov V, Schiavoni G, Holmes A, Kern W, Martelli MP, Pucciarini A, Bigerna B, Pacini R, Wells VA, Sportoletti P, Pettirossi V, Mannucci R, Elliott O, Liso A, Ambrosetti A, Pulsoni A, Forconi F, Trentin L, Semenzato G, Inghirami G, Capponi M, Di Raimondo F, Patti C, Arcaini L, Musto P, Pileri S, Haferlach C, Schnittger S, Pizzolo G, Foà R, Farinelli L, Haferlach T, Pasqualucci L, Rabadan R, Falini B. BRAF mutations in hairy-cell leukemia. N Engl J Med. 2011 Jun 16;364(24):2305-15. 

Pasqualucci L, Trifonov V, Fabbri G, Ma J, Rossi D, Chiarenza A, Wells VA, Grunn A, Messina M, Elliot O, Chan J, Bhagat G, Chadburn A, Gaidano G, Mullighan CG, Rabadan R, Dalla-Favera R. Analysis of the coding genome of diffuse large B-cell lymphoma. Nat Genet. 2011 Jul 31;43(9):830-7.  

Heidenreich B, Elliott O, Charney N, Virgien K, Bridges A, McKeon M, Peck S, Krause D, Gordon J, Hunter L. Limit on the electron electric dipole moment in gadolinium-iron garnet. Phys Rev Lett. 2005 Dec 15;95,253004.