Bao S*, Zhou X*, Zhang L, Zhou J, To KK, Wang B, Wang L, Zhang X, Song YQ., Prioritizing genes responsible for host resistance to influenza using network approaches. BMC Genomics, 2013. 14(1): p. 816.

Bao SY, Jiang R, Kwan WK, Wang BB, Ma X, Song YQ. Evaluation of next-generation sequencing software in mapping and assembly. J Hum Genet, 2011. 56(6): p. 406-14. (the first comprehensive benchmark of NGS mapping and assembly tools; cited by 120)

Zhou X*, Bao S*, Wang B, Zhang X, and Song YQ, Short Reads Mapping for Exome Sequencing. Methods in Molecular Biology, ed. N. Shomron. Vol. 1038. 2013: Springer.

Li MX, Kwan JS, Bao SY, Yang WL, Ho SL, Song YQ, Sham PC. Predicting Mendelian disease-causing non-synonymous single nucleotide variants in exome sequencing studies. PLoS Genet 2013, 9:e1003143.

Li MX, Gui HS, Kwan JS, Bao SY, Sham PC. A comprehensive framework for prioritizing variants in exome sequencing studies of Mendelian diseases. Nucleic Acids Res, 2012. 40(7): p. e53.1

Tian F, Chen J, Bao S, Shi L, Liu X, Grossman R. A graph model based study on regulatory impacts of transcription factors of Drosophila melanogaster and comparison across species. Biochemical and Biophysical Research Communications, 2009 Sep 4;386(4):559-62.

Janice Hiu Chor Plani-Lam, Tai Cheong Chow, Kam Leung Siu, Wing Hin Chau, Ming-Him James Ng, Suying Bao, Cheung Toa Ng, Pak Sham, Daisy Kwok Yan Shum, Evan Ingley, Dong Yan Jin, You-Qiang Song., PTPN21 exerts pro-neuronal survival and neuritic elongation via ErbB4/NRG3 signaling, The International Journal of Biochemistry & Cell Biology, 2015.02.003.