Gustavo Stolovitzky

Selected Publications

Chen X, Houten S, Allette K, Sebra RP, Stolovitzky G, Losic B. Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology. Pac Symp Biocomput. 2018;23:8-19.

Hansen J, Meretzky D, Woldesenbet S, Stolovitzky G, Iyengar R. A flexible ontology for inference of emergent whole cell function from relationships between subcellular processes. Sci Rep. 2017 Dec 18.

Gönen M, Weir BA, Cowley GS, Vazquez F, Guan Y, Jaiswal A, Karasuyama M, Uzunangelov V, Wang T, Tsherniak A, Howell S, Marbach D, Hoff B, Norman TC, Airola A, Bivol A, Bunte K, Carlin D, Chopra S, Deran A, Ellrott K, Gopalacharyulu P, Graim K, Kaski S, Khan SA, Newton Y, Ng S, Pahikkala T, Paull E, Sokolov A, Tang H, Tang J, Wennerberg K, Xie Y, Zhan X, Zhu F; Broad-DREAM Community, Aittokallio T, Mamitsuka H, Stuart JM, Boehm JS, Root DE, Xiao G, Stolovitzky G, Hahn WC, Margolin AA. A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines. Cell Syst. 2017 Nov 22;5(5):485-497.e3. Epub 2017 Oct 4.

Hu H, Siu VS, Gifford SM, Kim S, Lu M, Meyer P, Stolovitzky G. Bio-inspired silicon nanospikes fabricated by metal-assisted chemical etching for antibacterial surfaces . Applied Physics Letters 111 (25), 253701. 2017 Nov.

Azencott CA, Aittokallio T, Roy S; DREAM Idea Challenge Consortium, Norman T, Friend S, Stolovitzky G, Goldenberg A. The inconvenience of data of convenience: computational research beyond post-mortem analyses. Nat Methods. 2017 Sep 29;14(10):937-938.

Kim SC, Wunsch BH, Hu H, Smith JT, Austin RH, Stolovitzky G. Broken flow symmetry explains the dynamics of small particles in deterministic lateral displacement arrays. Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):E5034-E5041. Epub 2017 Jun 12.

Boutros PC, Margolin AA, Stuart JM, Califano A, Stolovitzky G.  Toward better benchmarking: challenge-based methods assessment in cancer genomics . Genome Biol. 2014 Sep 17;15(9):462.

Pang P, Ashcroft BA, Song W, Zhang P, Biswas S, Qing Q, Yang J, Nemanich RJ, Bai J, Smith JT, Reuter K, Balagurusamy VS, Astier Y, Stolovitzky G, Lindsay S.  Fixed gap tunnel junction for reading DNA nucleotides . ACS Nano. 2014 Dec 23;8(12):11994-2003.

Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K; NCI DREAM Community, Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G.  A community effort to assess and improve drug sensitivity prediction algorithms . Nat Biotechnol. 2014 Dec;32(12):1202-12.

Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, Mattioli M, Alvarez MJ, Shen Y; NCI-DREAM Community, Gallahan D, Singer D, Saez-Rodriguez J, Xie Y, Stolovitzky G, Califano A; NCI-DREAM Community.  A community computational challenge to predict the activity of pairs of compounds . Nat Biotechnol. 2014 Dec;32(12):1213-22.

Prill RJ, Vogel R, Cecchi GA, Altan-Bonnet G, Stolovitzky G.  Noise-driven causal inference in biomolecular networks . PLoS One. 2015 Jun 1;10(6):e0125777.