Publications

2005 Publications

André Boorsma, Barrett Foat, Daniel Vis, Frans Klis, Harmen Bussemaker . 2005. T-profiler: scoring the activity of predefined groups of genes using gene expression data.. Nucleic Acids Res. 33 (Web Server issue) :W592-5 ▶ Go to Pubmed

German Cavelier, Dimitris Anastassiou . 2005. Phenotype analysis using network motifs derived from changes in regulatory network dynamics.. Proteins. 60 (3) :525-46 ▶ Go to Pubmed

Chien Chen, Shoshana Posy, Avinoam Ben-Shaul, Lawrence Shapiro, Barry Honig . 2005. Specificity of cell-cell adhesion by classical cadherins: Critical role for low-affinity dimerization through beta-strand swapping.. Proc Natl Acad Sci U S A. 102 (24) :8531-6 ▶ Go to Pubmed

Jason Weston, Christina Leslie, Eugene Ie, Dengyong Zhou, Andre Elisseeff, William Noble . 2005. Semi-supervised protein classification using cluster kernels.. Bioinformatics. 21 (15) :3241-7 ▶ Go to Pubmed

Marco Punta, Burkhard Rost . 2005. PROFcon: novel prediction of long-range contacts.. Bioinformatics. 21 (13) :2960-8 ▶ Go to Pubmed

M Alarcón, A Yonan, T Gilliam, Rita Cantor, D Geschwind . 2005. Quantitative genome scan and Ordered-Subsets Analysis of autism endophenotypes support language QTLs.. Mol Psychiatry. 10 (8) :747-57 ▶ Go to Pubmed

Hao Fan, Alan Mark, Jiang Zhu, Barry Honig . 2005. Comparative study of generalized Born models: protein dynamics.. Proc Natl Acad Sci U S A. 102 (19) :6760-4 ▶ Go to Pubmed

Rajesh Nair, Burkhard Rost . 2005. Mimicking cellular sorting improves prediction of subcellular localization.. J Mol Biol. 348 (1) :85-100 ▶ Go to Pubmed

Katia Basso, Adam Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano . 2005. Reverse engineering of regulatory networks in human B cells.. Nat Genet. 37 (4) :382-90 ▶ Go to Pubmed

Michael Cantor, Indra Sarkar, Olivier Bodenreider, Yves Lussier . 2005. Genestrace: phenomic knowledge discovery via structured terminology.. Pac Symp Biocomput. :103-14 ▶ Go to Pubmed

Trevor Siggers, Antonina Silkov, Barry Honig . 2005. Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity.. J Mol Biol. 345 (5) :1027-45 ▶ Go to Pubmed

Ying Tao, Carol Friedman, Yves Lussier . 2005. Visualizing information across multidimensional post-genomic structured and textual databases.. Bioinformatics. 21 (8) :1659-67 ▶ Go to Pubmed