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2005 Publications

André Boorsma, Barrett Foat, Daniel Vis, Frans Klis, Harmen Bussemaker .  2005.   T-profiler: scoring the activity of predefined groups of genes using gene expression data.. Nucleic Acids Res. 33 (Web Server issue) :W592-5 Go to Pubmed
German Cavelier, Dimitris Anastassiou .  2005.   Phenotype analysis using network motifs derived from changes in regulatory network dynamics.. Proteins. 60 (3) :525-46 Go to Pubmed
Chien Chen, Shoshana Posy, Avinoam Ben-Shaul, Lawrence Shapiro, Barry Honig .  2005.   Specificity of cell-cell adhesion by classical cadherins: Critical role for low-affinity dimerization through beta-strand swapping.. Proc Natl Acad Sci U S A. 102 (24) :8531-6 Go to Pubmed
Jason Weston, Christina Leslie, Eugene Ie, Dengyong Zhou, Andre Elisseeff, William Noble .  2005.   Semi-supervised protein classification using cluster kernels.. Bioinformatics. 21 (15) :3241-7 Go to Pubmed
Marco Punta, Burkhard Rost .  2005.   PROFcon: novel prediction of long-range contacts.. Bioinformatics. 21 (13) :2960-8 Go to Pubmed
M Alarcón, A Yonan, T Gilliam, Rita Cantor, D Geschwind .  2005.   Quantitative genome scan and Ordered-Subsets Analysis of autism endophenotypes support language QTLs.. Mol Psychiatry. 10 (8) :747-57 Go to Pubmed
Hao Fan, Alan Mark, Jiang Zhu, Barry Honig .  2005.   Comparative study of generalized Born models: protein dynamics.. Proc Natl Acad Sci U S A. 102 (19) :6760-4 Go to Pubmed
Rajesh Nair, Burkhard Rost .  2005.   Mimicking cellular sorting improves prediction of subcellular localization.. J Mol Biol. 348 (1) :85-100 Go to Pubmed
Katia Basso, Adam Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano .  2005.   Reverse engineering of regulatory networks in human B cells.. Nat Genet. 37 (4) :382-90 Go to Pubmed
Michael Cantor, Indra Sarkar, Olivier Bodenreider, Yves Lussier .  2005.   Genestrace: phenomic knowledge discovery via structured terminology.. Pac Symp Biocomput. :103-14 Go to Pubmed
Trevor Siggers, Antonina Silkov, Barry Honig .  2005.   Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity.. J Mol Biol. 345 (5) :1027-45 Go to Pubmed
Ying Tao, Carol Friedman, Yves Lussier .  2005.   Visualizing information across multidimensional post-genomic structured and textual databases.. Bioinformatics. 21 (8) :1659-67 Go to Pubmed