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2007

2007 Publications

Lee Sam, Yang Liu, Jianrong Li, Carol Friedman, Yves Lussier .  2007.   Discovery of protein interaction networks shared by diseases.. Pac Symp Biocomput. :76-87 ▶ Go to Pubmed
Rohit Joshi, Jonathan Passner, Remo Rohs, Rinku Jain, Alona Sosinsky, Michael Crickmore, Vinitha Jacob, Aneel Aggarwal, Barry Honig, Richard Mann .  2007.   Functional specificity of a Hox protein mediated by the recognition of minor groove structure.. Cell. 131 (3) :530-43 ▶ Go to Pubmed
Etay Ziv, Ilya Nemenman, Chris Wiggins .  2007.   Optimal signal processing in small stochastic biochemical networks.. PLoS One. 2 (10) :e1077 ▶ Go to Pubmed
Anshul Kundaje, Steve Lianoglou, Xuejing Li, David Quigley, Marta Arias, Chris Wiggins, Li Zhang, Christina Leslie .  2007.   Learning regulatory programs that accurately predict differential expression with MEDUSA.. Ann N Y Acad Sci. 1115 :178-202 ▶ Go to Pubmed
Adam Margolin, Andrea Califano .  2007.   Theory and limitations of genetic network inference from microarray data.. Ann N Y Acad Sci. 1115 :51-72 ▶ Go to Pubmed
Lawrence David, Chris Wiggins .  2007.   Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data.. Ann N Y Acad Sci. 1115 :90-101 ▶ Go to Pubmed
Harmen Bussemaker, Lucas Ward, André Boorsma .  2007.   Dissecting complex transcriptional responses using pathway-level scores based on prior information.. BMC Bioinformatics. 8 Suppl 6 :S6 ▶ Go to Pubmed
Michael Bales, Yves Lussier, Stephen Johnson .  2007.   Topological analysis of large-scale biomedical terminology structures.. J Am Med Inform Assoc. 14 (6) :788-97 ▶ Go to Pubmed
Ying Tao, Lee Sam, Jianrong Li, Carol Friedman, Yves Lussier .  2007.   Information theory applied to the sparse gene ontology annotation network to predict novel gene function.. Bioinformatics. 23 (13) :i529-38 ▶ Go to Pubmed
Wei Lim, Kai Wang, Celine Lefebvre, Andrea Califano .  2007.   Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.. Bioinformatics. 23 (13) :i282-8 ▶ Go to Pubmed
Andrey Rzhetsky, David Wajngurt, Naeun Park, Tian Zheng .  2007.   Probing genetic overlap among complex human phenotypes.. Proc Natl Acad Sci U S A. 104 (28) :11694-9 ▶ Go to Pubmed
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, William Stafford, Christina Leslie .  2007.   SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.. BMC Bioinformatics. 8 Suppl 4 :S2 ▶ Go to Pubmed
Nicholas Yagoda, Moritz von Rechenberg, Elma Zaganjor, Andras Bauer, Wan Yang, Daniel Fridman, Adam Wolpaw, Inese Smukste, John Peltier, Jay Boniface, Richard Smith, Stephen Lessnick, Sudhir Sahasrabudhe, Brent Stockwell .  2007.   RAS-RAF-MEK-dependent oxidative cell death involving voltage-dependent anion channels.. Nature. 447 (7146) :864-8 ▶ Go to Pubmed
Murat Cokol, Raul Rodriguez-Esteban, Andrey Rzhetsky .  2007.   A recipe for high impact.. Genome Biol. 8 (5) :406 ▶ Go to Pubmed
James Chen, Yang Liu, Lee Sam, Jianrong Li, Yves Lussier .  2007.   Evaluation of high-throughput functional categorization of human disease genes.. BMC Bioinformatics. 8 Suppl 3 :S7 ▶ Go to Pubmed
Murat Cokol, Ivan Iossifov, Raul Rodriguez-Esteban, Andrey Rzhetsky .  2007.   How many scientific papers should be retracted?. EMBO Rep. 8 (5) :422-3 ▶ Go to Pubmed
Alona Sosinsky, Barry Honig, Richard Mann, Andrea Califano .  2007.   Discovering transcriptional regulatory regions in Drosophila by a nonalignment method for phylogenetic footprinting.. Proc Natl Acad Sci U S A. 104 (15) :6305-10 ▶ Go to Pubmed
Autism Consortium, Peter Szatmari, Andrew Paterson, Lonnie Zwaigenbaum, Wendy Roberts, Jessica Brian, Xiao-Qing Liu, John Vincent, Jennifer Skaug, Ann Thompson, Lili Senman, Lars Feuk, Cheng Qian, Susan Bryson, Marshall Jones, Christian Marshall, Stephen Scherer, Veronica Vieland, Christopher Bartlett, La Mangin, Rhinda Goedken, Alberto Segre, Margaret Pericak-Vance, Michael Cuccaro, John Gilbert, Harry Wright, Ruth Abramson, Catalina Betancur, Thomas Bourgeron, Christopher Gillberg, Marion Leboyer, Joseph Buxbaum, Kenneth Davis, Eric Hollander, Jeremy Silverman, Joachim Hallmayer, Linda Lotspeich, James Sutcliffe, Jonathan Haines, Susan Folstein, Joseph Piven, Thomas Wassink, Val Sheffield, Daniel Geschwind, Maja Bucan, Ted Brown, Rita Cantor, John Constantino, Conrad Gilliam, Martha Herbert, Clara Lajonchere, David Ledbetter, Christa Lese-Martin, Janet Miller, Stan Nelson, Carol Samango-Sprouse, Sarah Spence, Matthew State, Rudolph Tanzi, Hilary Coon, Geraldine Dawson, Bernie Devlin, Annette Estes, Pamela Flodman, Lambertus Klei, William McMahon, Nancy Minshew, Jeff Munson, Elena Korvatska, Patricia Rodier, Gerard Schellenberg, Moyra Smith, Anne Spence, Chris Stodgell, Ping Tepper, Ellen Wijsman, Chang-En Yu, Bernadette Rogé, Carine Mantoulan, Kerstin Wittemeyer, Annemarie Poustka, Bärbel Felder, Sabine Klauck, Claudia Schuster, Fritz Poustka, Sven Bölte, Sabine Feineis-Matthews, Evelyn Herbrecht, Gabi Schmötzer, John Tsiantis, Katerina Papanikolaou, Elena Maestrini, Elena Bacchelli, Francesca Blasi, Simona Carone, Claudio Toma, Herman Van Engeland, Maretha de Jonge, Chantal Kemner, Frederieke Koop, Frederike Koop, Marjolein Langemeijer, Marjolijn Langemeijer, Channa Hijmans, Channa Hijmans, Wouter Staal, Gillian Baird, Patrick Bolton, Michael Rutter, Emma Weisblatt, Jonathan Green, Catherine Aldred, Julie-Anne Wilkinson, Andrew Pickles, Ann Le Couteur, Tom Berney, Helen McConachie, Anthony Bailey, Kostas Francis, Gemma Honeyman, Aislinn Hutchinson, Jeremy Parr, Simon Wallace, Anthony Monaco, Gabrielle Barnby, Kazuhiro Kobayashi, Janine Lamb, Ines Sousa, Nuala Sykes, Edwin Cook, Stephen Guter, Bennett Leventhal, Jeff Salt, Catherine Lord, Christina Corsello, Vanessa Hus, Daniel Weeks, Fred Volkmar, Maïté Tauber, Eric Fombonne, Andy Shih, Kacie Meyer .  2007.   Mapping autism risk loci using genetic linkage and chromosomal rearrangements.. Nat Genet. 39 (3) :319-28 ▶ Go to Pubmed
Harmen Bussemaker, Barrett Foat, Lucas Ward .  2007.   Predictive modeling of genome-wide mRNA expression: from modules to molecules.. Annu Rev Biophys Biomol Struct. 36 :329-47 ▶ Go to Pubmed
Dimitris Anastassiou .  2007.   Computational analysis of the synergy among multiple interacting genes.. Mol Syst Biol. 3 :83 ▶ Go to Pubmed
Frauke Greil, Elzo de Wit, Harmen Bussemaker, Bas van Steensel .  2007.   HP1 controls genomic targeting of four novel heterochromatin proteins in Drosophila.. EMBO J. 26 (3) :741-51 ▶ Go to Pubmed
Yves Lussier, Yang Liu .  2007.   Computational approaches to phenotyping: high-throughput phenomics.. Proc Am Thorac Soc. 4 (1) :18-25 ▶ Go to Pubmed
Hemant Varma, Cindy Voisine, Todd DeMarco, Elena Cattaneo, Donald Lo, Anne Hart, Brent Stockwell .  2007.   Selective inhibitors of death in mutant huntingtin cells.. Nat Chem Biol. 3 (2) :99-100 ▶ Go to Pubmed