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2012

2012 Publications

Dante Romanini, Pamela Peralta-Yahya, Vanessa Mondol, Virginia Cornish .  2012.   A Heritable Recombination System for Synthetic Darwinian Evolution in Yeast.. ACS Synth Biol. 1 (12) :602-609 ▶ Go to Pubmed
Xinan Yang, Haiquan Li, Kelly Regan, Jianrong Li, Yong Huang, Yves Lussier .  2012.   Towards mechanism classifiers: expression-anchored Gene Ontology signature predicts clinical outcome in lung adenocarcinoma patients.. AMIA Annu Symp Proc. 2012 :1040-9 ▶ Go to Pubmed
Cheng Zhang, Yoga Srinivasan, Daniel Arlow, Juan Fung, Daniel Palmer, Yaowu Zheng, Hillary Green, Anjali Pandey, Ron Dror, David Shaw, William Weis, Shaun Coughlin, Brian Kobilka .  2012.   High-resolution crystal structure of human protease-activated receptor 1.. Nature. 492 (7429) :387-92 ▶ Go to Pubmed
Brygida Bisikirska, S Adam, Mariano Alvarez, Presha Rajbhandari, R Cox, Celine Lefebvre, Kai Wang, Gabrielle Rieckhof, D Felsher, Andrea Califano .  2012.   STK38 is a critical upstream regulator of MYC's oncogenic activity in human B-cell lymphoma.. Oncogene. ▶ Go to Pubmed
Sarah Gilman, Jonathan Chang, Bin Xu, Tejdeep Bawa, Joseph Gogos, Maria Karayiorgou, Dennis Vitkup .  2012.   Diverse types of genetic variation converge on functional gene networks involved in schizophrenia.. Nat Neurosci. 15 (12) :1723-8 ▶ Go to Pubmed
Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang .  2012.   Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data.. BMC Genet. 13 :94 ▶ Go to Pubmed
Pier Palamara, Todd Lencz, Ariel Darvasi, Itsik Pe'er .  2012.   Length distributions of identity by descent reveal fine-scale demographic history.. Am J Hum Genet. 91 (5) :809-22 ▶ Go to Pubmed
Stephan Singer, Ruiying Zhao, Anthony Barsotti, Anette Ouwehand, Mina Fazlollahi, Elias Coutavas, Kai Breuhahn, Olaf Neumann, Thomas Longerich, Tobias Pusterla, Maureen Powers, Keith Giles, Peter Leedman, Jochen Hess, David Grunwald, Harmen Bussemaker, Robert Singer, Peter Schirmacher, Carol Prives .  2012.   Nuclear pore component Nup98 is a potential tumor suppressor and regulates posttranscriptional expression of select p53 target genes.. Mol Cell. 48 (5) :799-810 ▶ Go to Pubmed
Zhong Zhuang, Alexander Gusev, Judy Cho, Itsik Pe'er .  2012.   Detecting identity by descent and homozygosity mapping in whole-exome sequencing data.. PLoS One. 7 (10) :e47618 ▶ Go to Pubmed
Qiangfeng Zhang, Donald Petrey, Lei Deng, Li Qiang, Yu Shi, Chan Thu, Brygida Bisikirska, Celine Lefebvre, Domenico Accili, Tony Hunter, Tom Maniatis, Andrea Califano, Barry Honig .  2012.   Structure-based prediction of protein-protein interactions on a genome-wide scale.. Nature. 490 (7421) :556-60 ▶ Go to Pubmed
Thomas Urban, Yufeng Shen, Andrew Stolz, Naga Chalasani, Robert Fontana, James Rochon, Dongliang Ge, Kevin Shianna V, Ann Daly, Isabel Lucena, Matthew Nelson, Mariam Molokhia, Guruprasad Aithal, Aris Floratos, Itsik Pe'er, Jose Serrano, Herbert Bonkovsky, Timothy Davern, William Lee, Victor Navarro, Jayant Talwalkar, David Goldstein, Paul Watkins, Drug-Induced Network, DILIGEN, EUDRAGENE, Spanish Registry, International Consortium .  2012.   Limited contribution of common genetic variants to risk for liver injury due to a variety of drugs.. Pharmacogenet Genomics. 22 (11) :784-95 ▶ Go to Pubmed
Germán Plata, Tobias Fuhrer, Tzu-Lin Hsiao, Uwe Sauer, Dennis Vitkup .  2012.   Global probabilistic annotation of metabolic networks enables enzyme discovery.. Nat Chem Biol. 8 (10) :848-54 ▶ Go to Pubmed
Y Yang, J Wu, A Demir, Mireia Castillo-Martin, Rachel Melamed, G Zhang, M Fukunaga-Kanabis, R Perez-Lorenzo, B Zheng, D Silvers, G Brunner, S Wang, Raul Rabadan, Carlos Cordon-Cardo, J Celebi .  2012.   GAB2 induces tumor angiogenesis in NRAS-driven melanoma.. Oncogene. ▶ Go to Pubmed
Oliver Harrison, Jeremie Vendome, Julia Brasch, Xiangshu Jin, Soonjin Hong, Phinikoula Katsamba, Goran Ahlsen, Regina Troyanovsky, Sergey Troyanovsky, Barry Honig, Lawrence Shapiro .  2012.   Nectin ectodomain structures reveal a canonical adhesive interface.. Nat Struct Mol Biol. 19 (9) :906-15 ▶ Go to Pubmed
Davide Rossi, Vladimir Trifonov, Marco Fangazio, Alessio Bruscaggin, Silvia Rasi, Valeria Spina, Sara Monti, Tiziana Vaisitti, Francesca Arruga, Rosella Famà, Carmela Ciardullo, Mariangela Greco, Stefania Cresta, Daniela Piranda, Antony Holmes, Giulia Fabbri, Monica Messina, Andrea Rinaldi, Jiguang Wang, Claudio Agostinelli, Pier Piccaluga, Marco Lucioni, Fabrizio Tabbò, Roberto Serra, Silvia Franceschetti, Clara Deambrogi, Giulia Daniele, Valter Gattei, Roberto Marasca, Fabio Facchetti, Luca Arcaini, Giorgio Inghirami, Francesco Bertoni, Stefano Pileri, Silvia Deaglio, Robin Foá, Riccardo Dalla-Favera, Laura Pasqualucci, Raul Rabadan, Gianluca Gaidano .  2012.   The coding genome of splenic marginal zone lymphoma: activation of NOTCH2 and other pathways regulating marginal zone development.. J Exp Med. 209 (9) :1537-51 ▶ Go to Pubmed
Christopher Campbell, Pier Palamara, Maya Dubrovsky, Laura Botigué, Marc Fellous, Gil Atzmon, Carole Oddoux, Alexander Pearlman, Li Hao, Brenna Henn, Edward Burns, Carlos Bustamante, David Comas, Eitan Friedman, Itsik Pe'er, Harry Ostrer .  2012.   North African Jewish and non-Jewish populations form distinctive, orthogonal clusters.. Proc Natl Acad Sci U S A. 109 (34) :13865-70 ▶ Go to Pubmed
S Anthony, J St Leger, K Pugliares, H Ip, Joseph Chan, Zachary Carpenter, I Navarrete-Macias, M Sanchez-Leon, J Saliki, J Pedersen, W Karesh, P Daszak, Raul Rabadan, T Rowles, W Lipkin .  2012.   Emergence of fatal avian influenza in New England harbor seals.. MBio. 3 (4) :e00166-12 ▶ Go to Pubmed
Devendra Singh, Joseph Chan, Pietro Zoppoli, Francesco Niola, Ryan Sullivan, Angelica Castano, Eric Liu, Jonathan Reichel, Paola Porrati, Serena Pellegatta, Kunlong Qiu, Zhibo Gao, Michele Ceccarelli, Riccardo Riccardi, Daniel Brat, Abhijit Guha, Ken Aldape, John Golfinos, David Zagzag, Tom Mikkelsen, Gaetano Finocchiaro, Anna Lasorella, Raul Rabadan, Antonio Iavarone .  2012.   Transforming fusions of FGFR and TACC genes in human glioblastoma.. Science. 337 (6099) :1231-5 ▶ Go to Pubmed
Jingqiang Wang, Takashi Kobayashi, Nicolas Floc'h, Carolyn Kinkade, Alvaro Aytes, David Dankort, Celine Lefebvre, Antonina Mitrofanova, Robert Cardiff, Martin McMahon, Andrea Califano, Michael Shen, Cory Abate-Shen .  2012.   B-Raf activation cooperates with PTEN loss to drive c-Myc expression in advanced prostate cancer.. Cancer Res. 72 (18) :4765-76 ▶ Go to Pubmed
Andrea Califano, Atul Butte, Stephen Friend, Trey Ideker, Eric Schadt .  2012.   Leveraging models of cell regulation and GWAS data in integrative network-based association studies.. Nat Genet. 44 (8) :841-7 ▶ Go to Pubmed
Samuel Silverstein, Raul Rabadan .  2012.   How many neutrophils are enough (redux, redux)?. J Clin Invest. 122 (8) :2776-9 ▶ Go to Pubmed
Peter Freddolino, Saeed Tavazoie .  2012.   The dawn of virtual cell biology.. Cell. 150 (2) :248-50 ▶ Go to Pubmed
Nicolas Floc'h, Carolyn Kinkade, Takashi Kobayashi, Alvaro Aytes, Celine Lefebvre, Antonina Mitrofanova, Robert Cardiff, Andrea Califano, Michael Shen, Cory Abate-Shen .  2012.   Dual targeting of the Akt/mTOR signaling pathway inhibits castration-resistant prostate cancer in a genetically engineered mouse model.. Cancer Res. 72 (17) :4483-93 ▶ Go to Pubmed
Hany Girgis, Kendra Harris, Saeed Tavazoie .  2012.   Large mutational target size for rapid emergence of bacterial persistence.. Proc Natl Acad Sci U S A. 109 (31) :12740-5 ▶ Go to Pubmed
Daniel Marbach, James Costello, Robert Küffner, Nicole Vega, Robert Prill, Diogo Camacho, Kyle Allison, DREAM5 Consortium, Manolis Kellis, James Collins, Gustavo Stolovitzky .  2012.   Wisdom of crowds for robust gene network inference.. Nat Methods. 9 (8) :796-804 ▶ Go to Pubmed
Snehit Prabhu, Itsik Pe'er .  2012.   Ultrafast genome-wide scan for SNP-SNP interactions in common complex disease.. Genome Res. 22 (11) :2230-40 ▶ Go to Pubmed
Scott McIsaac, Allegra Petti, Harmen Bussemaker, David Botstein .  2012.   Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway.. Mol Biol Cell. 23 (15) :2993-3007 ▶ Go to Pubmed
Allegra Petti, Scott McIsaac, Olivia Ho-Shing, Harmen Bussemaker, David Botstein .  2012.   Combinatorial control of diverse metabolic and physiological functions by transcriptional regulators of the yeast sulfur assimilation pathway.. Mol Biol Cell. 23 (15) :3008-24 ▶ Go to Pubmed
Peter Freddolino, Hani Goodarzi, Saeed Tavazoie .  2012.   Fitness landscape transformation through a single amino acid change in the rho terminator.. PLoS Genet. 8 (5) :e1002744 ▶ Go to Pubmed
Santiago Vilar, Rave Harpaz, Eugenio Uriarte, Lourdes Santana, Raul Rabadan, Carol Friedman .  2012.   Drug-drug interaction through molecular structure similarity analysis.. J Am Med Inform Assoc. 19 (6) :1066-74 ▶ Go to Pubmed
Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang .  2012.   A unified framework for haplotype inference in nuclear families.. Ann Hum Genet. 76 (4) :312-25 ▶ Go to Pubmed
Yibing Shan, Michael Eastwood, Xuewu Zhang, Eric Kim, Anton Arkhipov, Ron Dror, John Jumper, John Kuriyan, David Shaw .  2012.   Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization.. Cell. 149 (4) :860-70 ▶ Go to Pubmed
Ron Dror, Robert Dirks, J Grossman, Huafeng Xu, David Shaw .  2012.   Biomolecular simulation: a computational microscope for molecular biology.. Annu Rev Biophys. 41 :429-52 ▶ Go to Pubmed
Bill Andreopoulos, Dimitris Anastassiou .  2012.   Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature.. Cancer Inform. 11 :61-75 ▶ Go to Pubmed
Peter Freddolino, Saeed Tavazoie .  2012.   Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior.. Annu Rev Cell Dev Biol. 28 :363-84 ▶ Go to Pubmed
Julia Brasch, Oliver Harrison, Barry Honig, Lawrence Shapiro .  2012.   Thinking outside the cell: how cadherins drive adhesion.. Trends Cell Biol. 22 (6) :299-310 ▶ Go to Pubmed
Dianne Dapito, Ali Mencin, Geum-Youn Gwak, Jean-Philippe Pradere, Myoung-Kuk Jang, Ingmar Mederacke, Jorge Caviglia, Hossein Khiabanian, Adebowale Adeyemi, Ramon Bataller, Jay Lefkowitch, Maureen Bower, Richard Friedman, Balfour Sartor, Raul Rabadan, Robert Schwabe .  2012.   Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4.. Cancer Cell. 21 (4) :504-16 ▶ Go to Pubmed
Alpan Raval, Stefano Piana, Michael Eastwood, Ron Dror, David Shaw .  2012.   Refinement of protein structure homology models via long, all-atom molecular dynamics simulations.. Proteins. 80 (8) :2071-9 ▶ Go to Pubmed
Brenna Henn, Lawrence Hon, Michael Macpherson, Nick Eriksson, Serge Saxonov, Itsik Pe'er, Joanna Mountain .  2012.   Cryptic distant relatives are common in both isolated and cosmopolitan genetic samples.. PLoS One. 7 (4) :e34267 ▶ Go to Pubmed
Morten Jensen, Vishwanath Jogini, David Borhani, Abba Leffler, Ron Dror, David Shaw .  2012.   Mechanism of voltage gating in potassium channels.. Science. 336 (6078) :229-33 ▶ Go to Pubmed
Hani Goodarzi, Hamed Najafabadi, Panos Oikonomou, Todd Greco, Lisa Fish, Reza Salavati, Ileana Cristea, Saeed Tavazoie .  2012.   Systematic discovery of structural elements governing stability of mammalian messenger RNAs.. Nature. 485 (7397) :264-8 ▶ Go to Pubmed
Wei-Yi Cheng, Jessica Kandel, Darrell Yamashiro, Peter Canoll, Dimitris Anastassiou .  2012.   A multi-cancer mesenchymal transition gene expression signature is associated with prolonged time to recurrence in glioblastoma.. PLoS One. 7 (4) :e34705 ▶ Go to Pubmed
Adelene Tan, Todd Riley, Tristan Coady, Harmen Bussemaker, James Manley .  2012.   TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements.. Proc Natl Acad Sci U S A. 109 (16) :6030-5 ▶ Go to Pubmed
Anat Kreimer, Oren Litvin, Ke Hao, Cliona Molony, Dana Pe'er, Itsik Pe'er .  2012.   Inference of modules associated to eQTLs.. Nucleic Acids Res. 40 (13) :e98 ▶ Go to Pubmed
Yong Chen, Ren Sheng, Morten Källberg, Antonina Silkov, Moe Tun, Nitin Bhardwaj, Svetlana Kurilova, Randy Hall, Barry Honig, Hui Lu, Wonhwa Cho .  2012.   Genome-wide functional annotation of dual-specificity protein- and lipid-binding modules that regulate protein interactions.. Mol Cell. 46 (2) :226-37 ▶ Go to Pubmed
Pablo Meyer, Julia Hoeng, Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay Royyuru, Manuel Peitsch, Gustavo Stolovitzky .  2012.   Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.. Bioinformatics. 28 (9) :1193-201 ▶ Go to Pubmed
Eimear Kenny, Itsik Pe'er, Amir Karban, Laurie Ozelius, Adele Mitchell, Sok Ng, Monica Erazo, Harry Ostrer, Clara Abraham, Maria Abreu, Gil Atzmon, Nir Barzilai, Steven Brant, Susan Bressman, Edward Burns, Yehuda Chowers, Lorraine Clark, Ariel Darvasi, Dana Doheny, Richard Duerr, Rami Eliakim, Nir Giladi, Peter Gregersen, Hakon Hakonarson, Michelle Jones, Karen Marder, Dermot McGovern, Jennifer Mulle, Avi Orr-Urtreger, Deborah Proctor, Ann Pulver, Jerome Rotter, Mark Silverberg, Thomas Ullman, Stephen Warren, Matti Waterman, Wei Zhang, Aviv Bergman, Lloyd Mayer, Seymour Katz, Robert Desnick, Judy Cho, Inga Peter .  2012.   A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci.. PLoS Genet. 8 (3) :e1002559 ▶ Go to Pubmed
Kresten Lindorff-Larsen, Paul Maragakis, Stefano Piana, Michael Eastwood, Ron Dror, David Shaw .  2012.   Systematic validation of protein force fields against experimental data.. PLoS One. 7 (2) :e32131 ▶ Go to Pubmed
Giusy Gatta, Teresa Palomero, Arianne Perez-Garcia, Alberto Ambesi-Impiombato, Mukesh Bansal, Zachary Carpenter, Kim De Keersmaecker, Xavier Sole, Luyao Xu, Elisabeth Paietta, Janis Racevskis, Peter Wiernik, Jacob Rowe, Jules Meijerink, Andrea Califano, Adolfo Ferrando .  2012.   Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL.. Nat Med. 18 (3) :436-40 ▶ Go to Pubmed
Andrew Kruse, Jianxin Hu, Albert Pan, Daniel Arlow, Daniel Rosenbaum, Erica Rosemond, Hillary Green, Tong Liu, Pil Chae, Ron Dror, David Shaw, William Weis, Jürgen Wess, Brian Kobilka .  2012.   Structure and dynamics of the M3 muscarinic acetylcholine receptor.. Nature. 482 (7386) :552-6 ▶ Go to Pubmed
Kresten Lindorff-Larsen, Nikola Trbovic, Paul Maragakis, Stefano Piana, David Shaw .  2012.   Structure and dynamics of an unfolded protein examined by molecular dynamics simulation.. J Am Chem Soc. 134 (8) :3787-91 ▶ Go to Pubmed
Benjamin Greenbaum, Olive Li, Leo Poon, Arnold Levine, Raul Rabadan .  2012.   Viral reassortment as an information exchange between viral segments.. Proc Natl Acad Sci U S A. 109 (9) :3341-6 ▶ Go to Pubmed
María Martínez, Alberto Corradin, Ulf Klein, Mariano Alvarez, Gianna Toffolo, Barbara di Camillo, Andrea Califano, Gustavo Stolovitzky .  2012.   Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis.. Proc Natl Acad Sci U S A. 109 (7) :2672-7 ▶ Go to Pubmed
Andrea Califano, Manolis Kellis, Gustavo Stolovitzky .  2012.   Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 special issue.. J Comput Biol. 19 (2) :101 ▶ Go to Pubmed
Xinan Yang, Kelly Regan, Yong Huang, Qingbei Zhang, Jianrong Li, Tanguy Seiwert, Ezra Cohen, Rosie Xing, Yves Lussier .  2012.   Single sample expression-anchored mechanisms predict survival in head and neck cancer.. PLoS Comput Biol. 8 (1) :e1002350 ▶ Go to Pubmed
Saurav Guha, Jeffrey Rosenfeld, Anil Malhotra, Annette Lee, Peter Gregersen, John Kane, Itsik Pe'er, Ariel Darvasi, Todd Lencz .  2012.   Implications for health and disease in the genetic signature of the Ashkenazi Jewish population.. Genome Biol. 13 (1) :R2 ▶ Go to Pubmed
Paola Nicoletti, Vassiliki Cartsos, Penelope Palaska, Yufeng Shen, Aris Floratos, Athanasios Zavras .  2012.   Genomewide pharmacogenetics of bisphosphonate-induced osteonecrosis of the jaw: the role of RBMS3.. The oncologist. 17 (2) :279-87 ▶ Go to Pubmed
Paola Nicoletti, Vassiliki Cartsos, Penelope Palaska, Yufeng Shen, Aris Floratos, Athanasios Zavras .  2012.   Genomewide pharmacogenetics of bisphosphonate-induced osteonecrosis of the jaw: the role of RBMS3.. Oncologist. 17 (2) :279-87 ▶ Go to Pubmed
Caroline Ferreira, James Chen, Jianrong Li, Kazuhiro Shimomura, Xinan Yang, Yves Lussier, Lawrence Pinto, Julian Solway .  2012.   Genetic interactions between chromosomes 11 and 18 contribute to airway hyperresponsiveness in mice.. PLoS One. 7 (1) :e29579 ▶ Go to Pubmed
Celine Lefebvre, Gabrielle Rieckhof, Andrea Califano .  2012.   Reverse-engineering human regulatory networks.. Wiley Interdiscip Rev Syst Biol Med. 4 (4) :311-25 ▶ Go to Pubmed
Panagiotis Ntziachristos, Aristotelis Tsirigos, Pieter Van Vlierberghe, Jelena Nedjic, Thomas Trimarchi, Maria Flaherty, Dolors Ferres-Marco, Vanina da Ros, Zuojian Tang, Jasmin Siegle, Patrik Asp, Michael Hadler, Isaura Rigo, Kim De Keersmaecker, Jay Patel, Tien Huynh, Filippo Utro, Sandrine Poglio, Jeremy Samon, Elisabeth Paietta, Janis Racevskis, Jacob Rowe, Raul Rabadan, Ross Levine, Stuart Brown, Francoise Pflumio, Maria Dominguez, Adolfo Ferrando, Iannis Aifantis .  2012.   Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia.. Nat Med. 18 (2) :298-301 ▶ Go to Pubmed
Alexander Eletsky, Donald Petrey, Qiangfeng Zhang, Hsiau-Wei Lee, Thomas Acton, Rong Xiao, John Everett, James Prestegard, Barry Honig, Gaetano Montelione, Thomas Szyperski .  2012.   Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771.. J Struct Funct Genomics. 13 (1) :1-7 ▶ Go to Pubmed
David Borhani, David Shaw .  2012.   The future of molecular dynamics simulations in drug discovery.. J Comput Aided Mol Des. 26 (1) :15-26 ▶ Go to Pubmed
Xiangshu Jin, Melissa Walker, Klara Felsovalyi, Jeremie Vendome, Fabiana Bahna, Seetha Mannepalli, Filip Cosmanescu, Goran Ahlsen, Barry Honig, Lawrence Shapiro .  2012.   Crystal structures of Drosophila N-cadherin ectodomain regions reveal a widely used class of Ca²+-free interdomain linkers.. Proc Natl Acad Sci U S A. 109 (3) :E127-34 ▶ Go to Pubmed
Alexander Gusev, M Shah, Eimear Kenny, A Ramachandran, Jennifer Lowe, Jacqueline Salit, C Lee, E Levandowsky, T Weaver, Q Doan, H Peckham, S McLaughlin, M Lyons, N Sheth V, Markus Stoffel, F De La Vega, Jeffrey Friedman, Jan Breslow, Itsik Pe'er .  2012.   Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population.. Genetics. 190 (2) :679-89 ▶ Go to Pubmed
Ninad Dewal, Yang Hu, Matthew Freedman, Thomas Laframboise, Itsik Pe'er .  2012.   Calling amplified haplotypes in next generation tumor sequence data.. Genome Res. 22 (2) :362-74 ▶ Go to Pubmed
Peter Freddolino, Sasan Amini, Saeed Tavazoie .  2012.   Newly identified genetic variations in common Escherichia coli MG1655 stock cultures.. J Bacteriol. 194 (2) :303-6 ▶ Go to Pubmed
Aris Floratos, Barry Honig, Dana Pe'er, Andrea Califano .  2012.   Using systems and structure biology tools to dissect cellular phenotypes.. J Am Med Inform Assoc. 19 (2) :171-5 ▶ Go to Pubmed
Binquan Luan, Gustavo Stolovitzky, Glenn Martyna .  2012.   Slowing and controlling the translocation of DNA in a solid-state nanopore.. Nanoscale. 4 (4) :1068-77 ▶ Go to Pubmed
Davide Rossi, Silvia Rasi, Giulia Fabbri, Valeria Spina, Marco Fangazio, Francesco Forconi, Roberto Marasca, Luca Laurenti, Alessio Bruscaggin, Michaela Cerri, Sara Monti, Stefania Cresta, Rosella Famà, Lorenzo De Paoli, Pietro Bulian, Valter Gattei, Anna Guarini, Silvia Deaglio, Daniela Capello, Raul Rabadan, Laura Pasqualucci, Riccardo Dalla-Favera, Robin Foá, Gianluca Gaidano .  2012.   Mutations of NOTCH1 are an independent predictor of survival in chronic lymphocytic leukemia.. Blood. 119 (2) :521-9 ▶ Go to Pubmed
Sabrina Iñigo, Mariano Alvarez, Bárbara Strasser, Andrea Califano, Pablo Cerdán .  2012.   PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis.. Plant J. 69 (4) :601-12 ▶ Go to Pubmed
Alexander Gusev, Pier Palamara, Gregory Aponte, Zhong Zhuang, Ariel Darvasi, Peter Gregersen, Itsik Pe'er .  2012.   The architecture of long-range haplotypes shared within and across populations.. Mol Biol Evol. 29 (2) :473-86 ▶ Go to Pubmed
Mukesh Bansal, Andrea Califano .  2012.   Genome-wide dissection of posttranscriptional and posttranslational interactions.. Methods Mol Biol. 786 :131-49 ▶ Go to Pubmed
C Velez, Pier Palamara, J Guevara-Aguirre, L Hao, T Karafet, M Guevara-Aguirre, Alexander Pearlman, Carole Oddoux, M Hammer, Edward Burns, Itsik Pe'er, G Atzmon, Harry Ostrer .  2012.   The impact of Converso Jews on the genomes of modern Latin Americans.. Hum Genet. 131 (2) :251-63 ▶ Go to Pubmed
Cynthia Rudin, David Waltz, Roger Anderson, Albert Boulanger, Ansaf Salleb-Aouissi, Maggie Chow, Haimonti Dutta, Philip Gross, Bert Huang, Steve Ierome, Delfina Isaac, Arthur Kressner, Rebecca Passonneau, Axinia Radeva, Leon Wu .  2012.   Machine learning for the New York City power grid.. IEEE Trans Pattern Anal Mach Intell. 34 (2) :328-45 ▶ Go to Pubmed
Yufeng Shen, Paola Nicoletti, Aris Floratos, Munir Pirmohamed, Mariam Molokhia, P Geppetti, S Benemei, B Giomi, D Schena, A Vultaggio, R Stern, M Daly, Sally John, M Nelson, Itsik Pe'er, International Consortium .  2012.   Genome-wide association study of serious blistering skin rash caused by drugs.. Pharmacogenomics J. 12 (2) :96-104 ▶ Go to Pubmed