Browse by Software Type
- All Software Types
- Reverse Engineering and Analysis of Regulatory Networks
- Protein/RNA Structure Prediction, Analysis, and Visualization
- Nucleic Acid and Protein Sequence Analysis and Annotation
- Gene Expression Data Analysis
- Genetic Data Analysis
- Computational Learning and Natural Language Processing
- Simulation
- Integration of Genomics Data
- Immuno-Genomics Data Analysis
- Protein Interaction Prediction
- Protein Structure Prediction and Analysis
- Other Tools
DelPhi
Lead Investigator(s)Barry Honig
Provides numerical solutions to the Poisson-Boltzmann equation (both linear and nonlinear form) for molecules of arbitrary shape and charge distribution.
JACKAL
Lead Investigator(s)Barry Honig
A collection of programs for the modeling and analysis of protein structures.
Nest
Lead Investigator(s)Barry Honig
An algorithm for modeling protein structure based on a sequence-template alignment.
PredUs
Lead Investigator(s)Barry Honig
A tool for the prediction of protein-protein interfaces based on interface conservation among structurally similar protein neighbors.
SCREEN
Lead Investigator(s)Barry Honig
A tool for identifying protein cavities and computing cavity attributes that can be applied for classification and analysis.
Ska
Lead Investigator(s)Barry Honig
A program to compare and align protein structures.
SURFace
Lead Investigator(s)Barry Honig
Programs that calculate solvent accessible surface area and curvature-corrected solvent accessible surface area.