- All Software Types
- Reverse Engineering and Analysis of Regulatory Networks
- Protein/RNA Structure Prediction, Analysis, and Visualization
- Nucleic Acid and Protein Sequence Analysis and Annotation
- Gene Expression Data Analysis
- Genetic Data Analysis
- Computational Learning and Natural Language Processing
- Integration of Genomics Data
- Immuno-Genomics Data Analysis
- Protein Interaction Prediction
- Protein Structure Prediction and Analysis
- Other Tools
A method for calling copy number variants from exome sequencing data with an arbitrary number of reference samples.
A hidden Markov model for detecting copy number variants in exome sequence data.
DASH (DASH Associates Shared Haplotypes) is a tool for detecting association to clusters of identity by descent (IBD) segments detected by the Germline software tool.
Uses copy number and mutation data from a cohort of patients, for example from TCGA, to find modules of genes with a related mutation pattern.
An algorithm for discovering long shared segments of identity by descent (IBD) between pairs of (unrelated) individuals in a large population.
HADiT (Haplotype Amplification Distortion in Tumors) is a tool for computing and visualizing allelic distortion in tumor SNP data.
A tool for calling amplified alleles and constructing the amplified haplotype within called tumor amplicons.
A method for inferring per-locus human leukocyte antigen types using shared segments that are identical by descent (IBD), inferred from genotype data.
A tool for selecting individual for sequencing by total information potential, based on GERMLINE output.
Uses genome-wide genotype data to estimate individual disease susceptibility.
Method to predict deleterious genetic effect of missense variants.
NORI (Non-coding RNA Identification) is a computational tool that identifies lncRNAs using next generation sequencing.
A tool for power estimation and design of whole-genome resequencing projects aimed at rare variant associations.
A tool for designing overlapping pools for variant-carrier identification.
A program for calling variants in high-throughput sequencing data, particularly paired tumor-normal samples.
An efficient, scalable search algorithm that finds synergy between pairs of physically unlinked SNPs (genome-wide) in large case-control datasets.
A method to evaluate neuronal maturation based on alternative splicing profiles.
A light-weight application for reconstructing non-vertical evolutionary histories from sampled genetic sequences using persistent homology, a tool from topological data analysis.
A tool for parsing population ancestry of admixed individuals.
A tool for detecting copy number variants (CNVs) whole genome data based on both depth of coverage and mate pair information.