Browse by Software Type
- All Software Types
- Reverse Engineering and Analysis of Regulatory Networks
- Protein Structure Prediction, Analysis, and Visualization
- DNA and Protein Sequence Analysis and Annotation
- Gene Expression Data Analysis
- Genetic Data Analysis
- Computational Learning and Natural Language Processing
- Simulation
- Other Tools
Bias Removal
Lead Investigator(s) Andrea Califano
Two R scripts for removing location biases from a multiwell dataset.
▶ Software Page geWorkbench
Lead Investigator(s) Aris Floratos
Provides an integrated suite of genomics tools.
▶ Software Page Inference of Modules Associated with eQTL's
Lead Investigator(s) Itsik Pe'er
A tool for constructing modules regulated by eQTLs using gene expression and SNP variation data across multiple individuals.
Pandora
Lead Investigator(s) Raul Rabadan
A multi-step pipeline for finding pathogen sequences in RNA-seq data.
▶ Software Page Pegasus
Lead Investigator(s) Raul Rabadan
Enables annotation and prediction of oncogenic gene fusions using RNA-seq data.
▶ Software Page T-profiler
Lead Investigator(s) Harmen Bussemaker
A web-based tool that uses the t-test to score changes in the average activity of pre-defined groups of genes.
▶ Software Page TranscriptionDetector
Lead Investigator(s) Harmen Bussemaker
A tool for finding probes that measures significantly expressed loci in a genomic array experiment.
▶ Software Page