Bias Removal
Lead Investigator(s) Andrea Califano
Two R scripts for removing location biases from a multiwell dataset.
▶ Software Page
Camelot
Lead Investigator(s) Dana Pe'er
CAusal Modeling with Expression Linkage for cOmplex Traits (Camelot) provides a framework to both model complex traits and identify the potential underlying causal factors.
▶ Software Page
CLEANER
Lead Investigator(s) Mariano Alvarez
An R-system software package for the assembly of informative, transcript-specific probe-clusters for Affymetrix expression microarrays.
▶ Software Page
CONEXIC
Lead Investigator(s) Dana Pe'er
COpy Number and EXpression In Cancer (CONEXIC) is an algorithm that integrates matched copy number (amplifications and deletions) and gene expression data from tumor samples to identify driving mutations and the processes they influence.
▶ Software Page
Genatomy
Lead Investigator(s) Dana Pe'er
A visualization tool for biological data related to gene expression, genotypes, growth curves, and copy number variation.
▶ Software Page
geWorkbench
Lead Investigator(s) Aris Floratos
Provides an integrated suite of genomics tools.
▶ Software Page
Inference of Modules Associated with eQTL's
Lead Investigator(s) Itsik Pe'er
A tool for constructing modules regulated by eQTLs using gene expression and SNP variation data across multiple individuals.
Pandora
Lead Investigator(s) Raul Rabadan
A multi-step pipeline for finding pathogen sequences in RNA-seq data.
▶ Software Page
Pegasus
Lead Investigator(s) Raul Rabadan
Enables annotation and prediction of oncogenic gene fusions using RNA-seq data.
▶ Software Page
T-profiler
Lead Investigator(s) Harmen Bussemaker
A web-based tool that uses the t-test to score changes in the average activity of pre-defined groups of genes.
▶ Software Page
TranscriptionDetector
Lead Investigator(s) Harmen Bussemaker
A tool for finding probes that measures significantly expressed loci in a genomic array experiment.
▶ Software Page