ADOMETA
Lead Investigator(s) Dennis Vitkup
A bioinformatics resource designed to predict genes for orphan metabolic activities — known biochemical activities not currently assigned to genes in some or all organisms.
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CTK
Lead Investigator(s) Chaolin Zhang
A software package for comprehensive and streamlined analysis of CLIP data, including peak calling and identification of precise protein-RNA crosslink sites.
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HotSpots
Lead Investigator(s) Yufeng Shen
A method to infer cancer somatic mutation hotspots.
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mCarts
Lead Investigator(s) Chaolin Zhang
A hidden Markov model (HMM)-based method for predicting clusters of RNA motif sites.
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mRIN
Lead Investigator(s) Chaolin Zhang
A method for assessing a quantitative measure of mRNA integrity directly from RNA-seq data.
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OLego
Lead Investigator(s) Chaolin Zhang
A program for mapping RNA-seq reads, including de novo identification of exon junctions.
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OnTheFly
Lead Investigator(s) Barry Honig, Richard Mann
A database of Drosophila melanogaster transcription factors and their binding sites.
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Quantas
Lead Investigator(s) Chaolin Zhang
A pipeline for analyzing alternative splicing using RNA-seq data.
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Target Explorer
Lead Investigator(s) Barry Honig, Richard Mann
Automates the process of predicting the complex regulatory elements for a specified set of transcription factors in the Drosophila melanogaster genome.
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TOBI
Lead Investigator(s) Raul Rabadan
TOBI predicts somatic variants from .vcf or .bam input.
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