ADOMETA
Lead Investigator(s)Dennis Vitkup

A bioinformatics resource designed to predict genes for orphan metabolic activities — known biochemical activities not currently assigned to genes in some or all organisms.

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CTK
Lead Investigator(s)Chaolin Zhang

A software package for comprehensive and streamlined analysis of CLIP data, including peak calling and identification of precise protein-RNA crosslink sites.

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HotSpots
Lead Investigator(s)Yufeng Shen

A method to infer cancer somatic mutation hotspots.

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mCarts
Lead Investigator(s)Chaolin Zhang

A hidden Markov model (HMM)-based method for predicting clusters of RNA motif sites.

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mRIN
Lead Investigator(s)Chaolin Zhang

A method for assessing a quantitative measure of mRNA integrity directly from RNA-seq data.

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OLego
Lead Investigator(s)Chaolin Zhang

A program for mapping RNA-seq reads, including de novo identification of exon junctions.

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Quantas
Lead Investigator(s)Chaolin Zhang

A pipeline for analyzing alternative splicing using RNA-seq data.

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TOBI
Lead Investigator(s)Raul Rabadan

TOBI predicts somatic variants from .vcf or .bam input.

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