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- Reverse Engineering and Analysis of Regulatory Networks
- Protein/RNA Structure Prediction, Analysis, and Visualization
- Nucleic Acid and Protein Sequence Analysis and Annotation
- Gene Expression Data Analysis
- Genetic Data Analysis
- Computational Learning and Natural Language Processing
- Simulation
- Integration of Genomics Data
- Immuno-Genomics Data Analysis
- Protein Interaction Prediction
- Protein Structure Prediction and Analysis
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VIPER
Lead Investigator(s)Andrea Califano
R-system package including the Virtual Inference of Protein-activity by Enriched Regulon analysis (VIPER) and the MAster Regulator INference Analysis (MARINA) algorithms.
Xplorigin
Lead Investigator(s)Itsik Pe'er
A tool for parsing population ancestry of admixed individuals.
Zinfandel
Lead Investigator(s)Itsik Pe'er, Yufeng Shen
A tool for detecting copy number variants (CNVs) whole genome data based on both depth of coverage and mate pair information.
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