Search Publications

Rajesh Nair, Burkhard Rost .  2004.   LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.. Nucleic Acids Res. 32 (Web Server issue) :W517-21 Go to Pubmed
Burkhard Rost, Guy Yachdav, Jinfeng Liu .  2004.   The PredictProtein server.. Nucleic Acids Res. 32 (Web Server issue) :W321-6 Go to Pubmed
Jinfeng Liu, Burkhard Rost .  2004.   CHOP proteins into structural domain-like fragments.. Proteins. 55 (3) :678-88 Go to Pubmed
Jason Weston, Andre Elisseeff, Dengyong Zhou, Christina Leslie, William Noble .  2004.   Protein ranking: from local to global structure in the protein similarity network.. Proc Natl Acad Sci U S A. 101 (17) :6559-63 Go to Pubmed
Yves Lussier, Jianrong Li .  2004.   Terminological mapping for high throughput comparative biology of phenotypes.. Pac Symp Biocomput. :202-13 Go to Pubmed
Xiang Zhang, Katherine Heller, Ilana Hefter, Christina Leslie, Lawrence Chasin .  2003.   Sequence information for the splicing of human pre-mRNA identified by support vector machine classification.. Genome Res. 13 (12) :2637-50 Go to Pubmed
Christopher Tang, Lei Xie, Ingrid Y Y Koh, Shoshana Posy, Emil Alexov, Barry Honig .  2003.   On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles.. J Mol Biol. 334 (5) :1043-62 Go to Pubmed
Donald Petrey, Zhexin Xiang, Christopher Tang, Lei Xie, Marina Gimpelev, Therese Mitros, Cinque Soto, Sharon Goldsmith-Fischman, Andrew Kernytsky, Avner Schlessinger, Ingrid Y Y Koh, Emil Alexov, Barry Honig .  2003.   Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling.. Proteins. 53 Suppl 6 :430-5 Go to Pubmed
Ulf Klein, Yuhai Tu, Gustavo Stolovitzky, Jeffrey Keller, Joseph Haddad, Vladan Miljkovic, Giorgio Cattoretti, Andrea Califano, Riccardo Dalla-Favera .  2003.   Gene expression dynamics during germinal center transit in B cells.. Ann N Y Acad Sci. 987 :166-72 Go to Pubmed
Agatha Liu, Xinmin Zhang, Gustavo Stolovitzky, Andrea Califano, Stuart Firestein .  2003.   Motif-based construction of a functional map for mammalian olfactory receptors.. Genomics. 81 (5) :443-56 Go to Pubmed
Harmen Bussemaker, H Li, E Siggia .  2001.   Regulatory element detection using correlation with expression.. Nat Genet. 27 (2) :167-71 Go to Pubmed
Dimitris Anastassiou .  2000.   Frequency-domain analysis of biomolecular sequences.. Bioinformatics. 16 (12) :1073-81 Go to Pubmed
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu .  2000.   Analysis of gene expression microarrays for phenotype classification.. Proc Int Conf Intell Syst Mol Biol. 8 :75-85 Go to Pubmed
Harmen Bussemaker, H Li, E Siggia .  2000.   Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis.. Proc Natl Acad Sci U S A. 97 (18) :10096-100 Go to Pubmed
I Rigoutsos, A Floratos, C Ouzounis, Y Gao, L Parida .  1999.   Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins.. Proteins. 37 (2) :264-77 Go to Pubmed