Search Publications

Gordon Joyce, Adam Wheatley, Paul Thomas V, Gwo-Yu Chuang, Cinque Soto, Robert Bailer, Aliaksandr Druz, Ivelin Georgiev, Rebecca Gillespie, Masaru Kanekiyo, Wing-Pui Kong, Kwanyee Leung, Sandeep Narpala, Madhu Prabhakaran, Eun Yang, Baoshan Zhang, Yi Zhang, Mangaiarkarasi Asokan, Jeffrey Boyington, Tatsiana Bylund, Sam Darko, Christopher Lees, Amy Ransier, Chen-Hsiang Shen, Lingshu Wang, James Whittle, Xueling Wu, Hadi Yassine, Celia Santos, Yumiko Matsuoka, Yaroslav Tsybovsky, Ulrich Baxa, NISC Program, James Mullikin, Kanta Subbarao, Daniel Douek, Barney Graham, Richard Koup, Julie Ledgerwood, Mario Roederer, Lawrence Shapiro, Peter Kwong, John Mascola, Adrian McDermott .  2016.   Vaccine-Induced Antibodies that Neutralize Group 1 and Group 2 Influenza A Viruses.. Cell. 166 (3) :609-23 Go to Pubmed
Laura Belver, Adolfo Ferrando .  2016.   The genetics and mechanisms of T cell acute lymphoblastic leukaemia.. Nat Rev Cancer. 16 (8) :494-507 Go to Pubmed
Jeremy Chang, Kayla Quinnies, Ronald Realubit, Charles Karan, Jacob Rand, Nicholas Tatonetti .  2016.   A novel, rapid method to compare the therapeutic windows of oral anticoagulants using the Hill coefficient.. Sci Rep. 6 :29387 Go to Pubmed
Robert Moskovitch, Hyunmi Choi, George Hripcsak, Nicholas Tatonetti .  2016.   Prognosis of Clinical Outcomes with Temporal Patterns and Experiences with One Class Feature Selection.. IEEE/ACM Trans Comput Biol Bioinform. Go to Pubmed
Timothy Olsen, Jing Zhu, Jinho Kim, Renjun Pei, Milan Stojanovic, Qiao Lin .  2016.   An Integrated Microfluidic SELEX Approach Using Combined Electrokinetic and Hydrodynamic Manipulation.. J Lab Autom. Go to Pubmed
Julio Saez-Rodriguez, James Costello, Stephen Friend, Michael Kellen, Lara Mangravite, Pablo Meyer, Thea Norman, Gustavo Stolovitzky .  2016.   Crowdsourcing biomedical research: leveraging communities as innovation engines.. Nat Rev Genet. 17 (8) :470-86 Go to Pubmed
Daniela Gerhard, Paul Clemons, Alykhan Shamji, Cindy Hon, Bridget Wagner, Stuart Schreiber, Alex Krasnitz, Raffaella Sordella, Chris Sander, Scott Lowe, Scott Powers, Kenneth Smith, Mahalaxmi Aburi, Antonio Iavarone, Anna Lasorella, Jose Silva, Brent Stockwell, Andrea Califano, Jesse Boehm, Francisca Vazquez, Barbara Weir, William Hahn, Fadlo Khuri, Carlos Moreno, Margaret Johns, Haian Fu, Olga Nikolova, Eduardo Mendez, Vijayakrishna Gadi, Adam Margolin, Carla Grandori, Christopher Kemp, Edus Warren, Stanley Riddell, Martin McIntosh, Olivier Gevaert, Calvin Kuo, Hanlee Ji, Harshil Dhruv, Darren Finlay, Jeffrey Kiefer, Seungchan Kim, Kristiina Vuori, Michael Berens, Matthew Hangauer, Michael Boettcher, Jonathan Weissman, Trever Bivona, Sourav Bandyopadhyay, Michael McManus, Frank McCormick, Ozlem Aksoy, Erin Simonds, Tina Zheng, Justin Chen, Zhenyi An, Allan Balmain, William Weiss, Ken Chen, Han Liang, Kenneth Scott, Gordon Mills, Bruce Posner, John MacMillan, John Minna, Michael White, Michael Roth, Subhashini Jagu, Jessica Mazerik .  2016.   Transforming Big Data into cancer-relevant insight: An initial, multi-tier approach to assess reproducibility and relevance.. Mol Cancer Res. Go to Pubmed
Esther Berko, Megan Cho, Christine Eng, Yunru Shao, David Sweetser, Jessica Waxler, Nathaniel Robin, Fallon Brewer, Sandra Donkervoort, Payam Mohassel, Carsten Bönnemann, Martin Bialer, Christine Moore, Lynne Wolfe, Cynthia Tifft, Yufeng Shen, Kyle Retterer, Francisca Millan, Wendy Chung .  2016.   De novo missense variants in HECW2 are associated with neurodevelopmental delay and hypotonia.. J Med Genet. Go to Pubmed
Nicholas Hornstein, Daniela Torres, Sohani Sharma, Guomei Tang, Peter Canoll, Peter Sims .  2016.   Ligation-free ribosome profiling of cell type-specific translation in the brain.. Genome Biol. 17 (1) :149 Go to Pubmed
Ling-Shiang Chuang, Nicole Villaverde, Ken Hui, Arthur Mortha, Adeeb Rahman, Adam Levine, Talin Haritunians, Sok Ng, Wei Zhang, Nai-Yun Hsu, Jody-Ann Facey, Tramy Luong, Heriberto Fernandez-Hernandez, Dalin Li, Manuel Rivas, Elena Schiff, Alexander Gusev, Phillip Schumm, Beatrice Bowen, Yashoda Sharma, Kaida Ning, Romain Remark, Sacha Gnjatic, Peter Legnani, James George, Bruce Sands, Joanne Stempak, Lisa Datta, Seth Lipka, Seymour Katz, Adam Cheifetz, Nir Barzilai, Nikolas Pontikos, Clara Abraham, Marla Dubinsky, Stephan Targan, Kent Taylor, Jerome Rotter, Ellen Scherl, Robert Desnick, Maria Abreu, Hongyu Zhao, Gil Atzmon, Itsik Pe'er, Subra Kugathasan, Hakon Hakonarson, Jacob McCauley, Todd Lencz, Ariel Darvasi, Vincent Plagnol, Mark Silverberg, Aleixo Muise, Steven Brant, Mark Daly, Anthony Segal, Richard Duerr, Miriam Merad, Dermot McGovern, Inga Peter, Judy Cho .  2016.   A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GM-CSF.. Gastroenterology. 151 (4) :710-723.e2 Go to Pubmed
Andrew Anzalone V, Zhixing Chen, Virginia Cornish .  2016.   Synthesis of photoactivatable azido-acyl caged oxazine fluorophores for live-cell imaging.. Chem Commun (Camb). Go to Pubmed
Hai Li, Takaaki Kuwajima, Derek Oakley, Elena Nikulina, Jianwei Hou, Wan Yang, Emily Lowry, Nuno Lamas, Mackenzie Amoroso, Gist Croft, Raghavendra Hosur, Hynek Wichterle, Said Sebti, Marie Filbin, Brent Stockwell, Christopher Henderson .  2016.   Protein Prenylation Constitutes an Endogenous Brake on Axonal Growth.. Cell Rep. Go to Pubmed
Lingling Shi, Yunfei Guo, Chengliang Dong, John Huddleston, Hui Yang, Xiaolu Han, Aisi Fu, Quan Li, Na Li, Siyi Gong, Katherine Lintner, Qiong Ding, Zou Wang, Jiang Hu, Depeng Wang, Feng Wang, Lin Wang, Gholson Lyon, Yongtao Guan, Yufeng Shen, Oleg Evgrafov V, James Knowles, Francoise Thibaud-Nissen, Valerie Schneider, Chack-Yung Yu, Libing Zhou, Evan Eichler, Kwok-Fai So, Kai Wang .  2016.   Long-read sequencing and de novo assembly of a Chinese genome.. Nat Commun. 7 :12065 Go to Pubmed
Pablo Camara, Daniel Rosenbloom, Kevin Emmett, Arnold Levine, Raul Rabadan .  2016.   Topological Data Analysis Generates High-Resolution, Genome-wide Maps of Human Recombination.. Cell Syst. 3 (1) :83-94 Go to Pubmed
Xiao Zhao, Keni Yang, Ruifang Zhao, Tianjiao Ji, Xiuchao Wang, Xiao Yang, Yinlong Zhang, Keman Cheng, Shaoli Liu, Jihui Hao, He Ren, Kam Leong, Guangjun Nie .  2016.   Inducing enhanced immunogenic cell death with nanocarrier-based drug delivery systems for pancreatic cancer therapy.. Biomaterials. 102 :187-197 Go to Pubmed
Aditya Dutta, Clémentine Le Magnen, Antonina Mitrofanova, Xuesong Ouyang, Andrea Califano, Cory Abate-Shen .  2016.   Identification of an NKX3.1-G9a-UTY transcriptional regulatory network that controls prostate differentiation.. Science. 352 (6293) :1576-80 Go to Pubmed
Valeria Spina, Hossein Khiabanian, Monica Messina, Sara Monti, Luciano Cascione, Alessio Bruscaggin, Elisa Spaccarotella, Antony Holmes, Luca Arcaini, Marco Lucioni, Fabrizio Tabbò, Sakellarios Zairis, Fary Diop, Michaela Cerri, Sabina Chiaretti, Roberto Marasca, Maurilio Ponzoni, Silvia Deaglio, Antonio Ramponi, Enrico Tiacci, Laura Pasqualucci, Marco Paulli, Brunangelo Falini, Giorgio Inghirami, Francesco Bertoni, Robin Foá, Raul Rabadan, Gianluca Gaidano, Davide Rossi .  2016.   The genetics of nodal marginal zone lymphoma.. Blood. Go to Pubmed
Ren Sheng, Da-Jung Jung, Antonina Silkov, Hyunjin Kim, Indira Singaram, Zhi-Gang Wang, Yao Xin, Eui Kim, Mi-Jeong Park, Pallavi Thiagarajan-Rosenkranz, Sean Smrt, Barry Honig, Kwanghee Baek, Sungho Ryu, Justin Lorieau, You-Me Kim, Wonhwa Cho .  2016.   Lipids Regulate Lck Protein Activity through Their Interactions with the Lck Src Homology 2 Domain.. J Biol Chem. 291 (34) :17639-50 Go to Pubmed
Mariano Alvarez, Yao Shen, Federico Giorgi, Alexander Lachmann, Belinda Ding, Hilda Ye, Andrea Califano .  2016.   Functional characterization of somatic mutations in cancer using network-based inference of protein activity.. Nat Genet. Go to Pubmed
Kenta Yamamoto, Jiguang Wang, Lisa Sprinzen, Jun Xu, Christopher Haddock, Chen Li, Brian Lee, Denis Loredan, Wenxia Jiang, Alessandro Vindigni, Dong Wang, Raul Rabadan, Shan Zha .  2016.   Kinase-dead ATM protein is highly oncogenic and can be preferentially targeted by Topo-isomerase I inhibitors.. Elife. 5 Go to Pubmed
Oliver Harrison, Julia Brasch, Gorka Lasso, Phinikoula Katsamba, Goran Ahlsen, Barry Honig, Lawrence Shapiro .  2016.   Structural basis of adhesive binding by desmocollins and desmogleins.. Proc Natl Acad Sci U S A. Go to Pubmed
Vesna Pulko, John Davies, Carmine Martinez, Marion Lanteri, Michael Busch, Michael Diamond, Kenneth Knox, Erin Bush, Peter Sims, Shripad Sinari, Dean Billheimer, Elias Haddad, Kristy Murray, Anne Wertheimer, Janko Nikolich-Žugich .  2016.   Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses.. Nat Immunol. Go to Pubmed
Jiguang Wang, Emanuela Cazzato, Erik Ladewig, Veronique Frattini, Daniel Rosenbloom, Sakellarios Zairis, Francesco Abate, Zhaoqi Liu, Oliver Elliott, Yong-Jae Shin, Jin-Ku Lee, In-Hee Lee, Woong-Yang Park, Marica Eoli, Andrew Blumberg, Anna Lasorella, Do-Hyun Nam, Gaetano Finocchiaro, Antonio Iavarone, Raul Rabadan .  2016.   Clonal evolution of glioblastoma under therapy.. Nat Genet. Go to Pubmed
Kaitlyn Gayvert, Etienne Dardenne, Cynthia Cheung, Mary Boland, Tal Lorberbaum, Jackline Wanjala, Yu Chen, Mark Rubin, Nicholas Tatonetti, David Rickman, Olivier Elemento .  2016.   A Computational Drug Repositioning Approach for Targeting Oncogenic Transcription Factors.. Cell Rep. 15 (11) :2348-56 Go to Pubmed
Jennifer Sims, Boris Grinshpun, Yaping Feng, Timothy Ung, Justin Neira, Jorge Samanamud, Peter Canoll, Yufeng Shen, Peter Sims, Jeffrey Bruce .  2016.   Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire.. Proc Natl Acad Sci U S A. Go to Pubmed
Clara Soria-Valles, Ana Gutiérrez-Fernández, Fernando Osorio, Dido Carrero, Adolfo Ferrando, Enrique Colado, Soledad Fernández-García, Elena Bonzon-Kulichenko, Jesús Vázquez, Antonio Fueyo, Carlos López-Otín .  2016.   MMP-25 Metalloprotease Regulates Innate Immune Response through NF-κB Signaling.. J Immunol. Go to Pubmed
Jef Boeke, George Church, Andrew Hessel, Nancy Kelley, Adam Arkin, Yizhi Cai, Rob Carlson, Aravinda Chakravarti, Virginia Cornish, Liam Holt, Farren Isaacs, Todd Kuiken, Marc Lajoie, Tracy Lessor, Jeantine Lunshof, Matthew Maurano, Leslie Mitchell, Jasper Rine, Susan Rosser, Neville Sanjana, Pamela Silver, David Valle, Harris Wang, Jeffrey Way, Luhan Yang .  2016.   The Genome Project-Write.. Science. Go to Pubmed
Jinho Kim, Timothy Olsen, Jing Zhu, John Hilton, Kyung-Ae Yang, Renjun Pei, Milan Stojanovic, Qiao Lin .  2016.   Integrated Microfluidic Isolation of Aptamers Using Electrophoretic Oligonucleotide Manipulation.. Sci Rep. 6 :26139 Go to Pubmed
Xian Hu, Chaoran Jing, Xiaochun Xu, Naotaka Nakazawa, Virginia Cornish, Felix Margadant, Michael Sheetz .  2016.   Cooperative Vinculin Binding to Talin Mapped by Time Resolved Super Resolution Microscopy.. Nano Lett. Go to Pubmed
Rebecca Lescarbeau, Liang Lei, Katrina Bakken, Peter Sims, Jann Sarkaria, Peter Canoll, Forest White .  2016.   Quantitative Phosphoproteomics Reveals Wee1 Kinase as a Therapeutic Target in a Model of Proneural Glioblastoma.. Mol Cancer Ther. Go to Pubmed
Zizhang Sheng, Chaim Schramm, Mark Connors, Lynn Morris, John Mascola, Peter Kwong, Lawrence Shapiro .  2016.   Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection.. PLoS Comput Biol. 12 (5) :e1004940 Go to Pubmed
Kerry Goodman, Rotem Rubinstein, Chan Thu, Fabiana Bahna, Seetha Mannepalli, Goran Ahlsen, Chelsea Rittenhouse, Tom Maniatis, Barry Honig, Lawrence Shapiro .  2016.   Structural Basis of Diverse Homophilic Recognition by Clustered α- and β-Protocadherins.. Neuron. 90 (4) :709-23 Go to Pubmed
Kenichi Shimada, Rachid Skouta, Anna Kaplan, Wan Yang, Miki Hayano, Scott Dixon, Lewis Brown, Carlos Valenzuela, Adam Wolpaw, Brent Stockwell .  2016.   Global survey of cell death mechanisms reveals metabolic regulation of ferroptosis.. Nat Chem Biol. Go to Pubmed
Alexander Lachmann, Federico Giorgi, Mariano Alvarez, Andrea Califano .  2016.   Detection and removal of spatial bias in multiwell assays.. Bioinformatics. Go to Pubmed
Alexander Lachmann, Federico Giorgi, Gonzalo Lopez, Andrea Califano .  2016.   ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information.. Bioinformatics. 32 (14) :2233-5 Go to Pubmed
Maddalena Paganin, Barbara Buldini, Giuseppe Germano, Elena Seganfreddo, Annamaria di Meglio, Elisa Magrin, Francesca Grillo, Martina Pigazzi, Carmelo Rizzari, Giovanni Cazzaniga, Hossein Khiabanian, Teresa Palomero, Raul Rabadan, Adolfo Ferrando, Giuseppe Basso .  2016.   A Case of T-cell Acute Lymphoblastic Leukemia Relapsed As Myeloid Acute Leukemia.. Pediatr Blood Cancer. Go to Pubmed
Meital Oren-Suissa, Emily Bayer, Oliver Hobert .  2016.   Sex-specific pruning of neuronal synapses in Caenorhabditis elegans.. Nature. Go to Pubmed
Priya Moorjani, Sriram Sankararaman, Qiaomei Fu, Molly Przeworski, Nick Patterson, David Reich .  2016.   A genetic method for dating ancient genomes provides a direct estimate of human generation interval in the last 45,000 years.. Proc Natl Acad Sci U S A. Go to Pubmed
Oliver Hobert .  2016.   A map of terminal regulators of neuronal identity in Caenorhabditis elegans.. Wiley Interdiscip Rev Dev Biol. Go to Pubmed
Manu Setty, Michelle Tadmor, Shlomit Reich-Zeliger, Omer Angel, Tomer Salame, Pooja Kathail, Kristy Choi, Sean Bendall, Nir Friedman, Dana Pe'er .  2016.   Wishbone identifies bifurcating developmental trajectories from single-cell data.. Nat Biotechnol. Go to Pubmed
Jose Utrilla, Edward O'Brien, Ke Chen, Douglas McCloskey, Jacky Cheung, Harris Wang, Dagoberto Armenta-Medina, Adam Feist, Bernhard Palsson .  2016.   Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution.. Cell Syst. 2 (4) :260-71 Go to Pubmed
Ritu Kushwaha, Nirmala Jagadish, Manjunath Kustagi, Geetu Mendiratta, Marco Seandel, Rekha Soni, James Korkola, Venkata Thodima, Andrea Califano, George Bosl, R Chaganti .  2016.   Mechanism and Role of SOX2 Repression in Seminoma: Relevance to Human Germline Specification.. Stem Cell Reports. Go to Pubmed
Thomas Willems, Melissa Gymrek, David Poznik, Chris Tyler-Smith, 1000 Chromosome Y Group, Yaniv Erlich .  2016.   Population-Scale Sequencing Data Enable Precise Estimates of Y-STR Mutation Rates.. Am J Hum Genet. Go to Pubmed
Roxanne Toivanen, Adithi Mohan, Michael Shen .  2016.   Basal Progenitors Contribute to Repair of the Prostate Epithelium Following Induced Luminal Anoikis.. Stem Cell Reports. Go to Pubmed
Tea Kaartokallio, Inkeri Lokki, Hanna Peterson, Katja Kivinen, Leena Hiltunen, Elina Salmela, Tuuli Lappalainen, Paula Maanselkä, Sanna Heino, Sakari Knuutila, Ayat Sayed, Lucilla Poston, Shaun Brennecke, Matthew Johnson, Linda Morgan, Eric Moses, Juha Kere, Hannele Laivuori .  2016.   Preeclampsia does not share common risk alleles in 9p21 with coronary artery disease and type 2 diabetes.. Ann Med. :1-7 Go to Pubmed
David Poznik, Yali Xue, Fernando Mendez, Thomas Willems, Andrea Massaia, Melissa Sayres, Qasim Ayub, Shane McCarthy, Apurva Narechania, Seva Kashin, Yuan Chen, Ruby Banerjee, Juan Rodriguez-Flores, Maria Cerezo, Haojing Shao, Melissa Gymrek, Ankit Malhotra, Sandra Louzada, Rob Desalle, Graham Ritchie, Eliza Cerveira, Tomas Fitzgerald, Erik Garrison, Anthony Marcketta, David Mittelman, Mallory Romanovitch, Chengsheng Zhang, Xiangqun Zheng-Bradley, Gonçalo Abecasis, Steven McCarroll, Paul Flicek, Peter Underhill, Lachlan Coin, Daniel Zerbino, Fengtang Yang, Charles Lee, Laura Clarke, Adam Auton, Yaniv Erlich, Robert Handsaker, 1000 Consortium, Carlos Bustamante, Chris Tyler-Smith .  2016.   Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.. Nat Genet. Go to Pubmed
Shuo Yang, Shai Carmi, Itsik Pe'er .  2016.   Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs.. J Comput Biol. Go to Pubmed
Antonio Gomes, Harris Wang .  2016.   The Role of Genome Accessibility in Transcription Factor Binding in Bacteria.. PLoS Comput Biol. 12 (4) :e1004891 Go to Pubmed
Yeh-Hsing Lao, Chun-Wei Chi, Sarah Friedrich, Konan Peck, Tza-Huei Wang, Kam Leong, Lin-Chi Chen .  2016.   Signal-On Protein Detection via Dye Translocation between Aptamer and Quantum Dot.. ACS Appl Mater Interfaces. Go to Pubmed
David Beck, Megan Cho, Francisca Millan, Carin Yates, Mark Hannibal, Bridget O'Connor, Marwan Shinawi, Anne Connolly, Darrel Waggoner, Sara Halbach, Brad Angle, Victoria Sanders, Yufeng Shen, Kyle Retterer, Amber Begtrup, Renkui Bai, Wendy Chung .  2016.   A recurrent de novo CTBP1 mutation is associated with developmental delay, hypotonia, ataxia, and tooth enamel defects.. Neurogenetics. Go to Pubmed
Shengpeng Wang, Yingqi Xu, Hon Chan, Hae-Won Kim, Yitao Wang, Kam Leong, Meiwan Chen .  2016.   phicaNanoparticle-mediated inhibition of survivin to overcome drug resistance in cancer therapy.. J Control Release. Go to Pubmed
Nathan Johns, Tomasz Blazejewski, Antonio Gomes, Harris Wang .  2016.   Principles for designing synthetic microbial communities.. Curr Opin Microbiol. 31 :146-153 Go to Pubmed
Genevera Allen, Nicola Amoroso, Catalina Anghel, Venkat Balagurusamy, Christopher Bare, Derek Beaton, Roberto Bellotti, David Bennett, Kevin Boehme, Paul Boutros, Laura Caberlotto, Cristian Caloian, Frederick Campbell, Elias Neto, Yu-Chuan Chang, Beibei Chen, Chien-Yu Chen, Ting-Ying Chien, Tim Clark, Sudeshna Das, Christos Davatzikos, Jieyao Deng, Donna Dillenberger, Richard Dobson, Qilin Dong, Jimit Doshi, Denise Duma, Rosangela Errico, Guray Erus, Evan Everett, David Fardo, Stephen Friend, Holger Fröhlich, Jessica Gan, Peter St George-Hyslop, Satrajit Ghosh, Enrico Glaab, Robert Green, Yuanfang Guan, Ming-Yi Hong, Chao Huang, Jinseub Hwang, Joseph Ibrahim, Paolo Inglese, Qijia Jiang, Yuriko Katsumata, John Kauwe, Arno Klein, Dehan Kong, Roland Krause, Emilie Lalonde, Mario Lauria, Eunjee Lee, Xihui Lin, Zhandong Liu, Julie Livingstone, Benjamin Logsdon, Simon Lovestone, Anandhi Lyappan, Michelle Ma, Ashutosh Malhotra, Lara Mangravite, Taylor Maxwell, Emily Merrill, John Nagorski, Aishwarya Namasivayam, Manjari Narayan, Mufassra Naz, Stephen Newhouse, Thea Norman, Ramil Nurtdinov, Yen-Jen Oyang, Yudi Pawitan, Shengwen Peng, Mette Peters, Stephen Piccolo, Paurush Praveen, Corrado Priami, Veronica Sabelnykova, Philipp Senger, Xia Shen, Andrew Simmons, Aristeidis Sotiras, Gustavo Stolovitzky, Sabina Tangaro, Andrea Tateo, Yi-An Tung, Nicholas Tustison, Erdem Varol, George Vradenburg, Michael Weiner, Guanghua Xiao, Lei Xie, Yang Xie, Jia Xu, Hojin Yang, Xiaowei Zhan, Yunyun Zhou, Fan Zhu, Hongtu Zhu, Shanfeng Zhu, Alzheimer's Initiative .  2016.   Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease.. Alzheimers Dement. Go to Pubmed
Rosemarie Mason, Hugh Welles, Cameron Adams, Bimal Chakrabarti, Jason Gorman, Tongqing Zhou, Richard Nguyen, Sijy O'Dell, Sabrina Lusvarghi, Carole Bewley, Hui Li, George Shaw, Zizhang Sheng, Lawrence Shapiro, Richard Wyatt, Peter Kwong, John Mascola, Mario Roederer .  2016.   Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability.. PLoS Pathog. 12 (4) :e1005537 Go to Pubmed
Javier Quilez, Audrey Guilmatre, Paras Garg, Gareth Highnam, Melissa Gymrek, Yaniv Erlich, Ricky Joshi, David Mittelman, Andrew Sharp .  2016.   Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.. Nucleic Acids Res. Go to Pubmed
Rob Patro, Raquel Norel, Robert Prill, Julio Saez-Rodriguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Luštrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans-Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford .  2016.   A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin.. BMC Bioinformatics. 17 :155 Go to Pubmed
Benedikt Westphalen, Yoshihiro Takemoto, Takayuki Tanaka, Marina Macchini, Zhengyu Jiang, Bernhard Renz, Xiaowei Chen, Steffen Ormanns, Karan Nagar, Yagnesh Tailor, Randal May, Youngjin Cho, Samuel Asfaha, Daniel Worthley, Yoku Hayakawa, Aleksandra Urbanska, Michael Quante, Maximilian Reichert, Joshua Broyde, Prem Subramaniam, Helen Remotti, Gloria Su, Anil Rustgi, Richard Friedman, Barry Honig, Andrea Califano, Courtney Houchen, Kenneth Olive, Timothy Wang .  2016.   Dclk1 Defines Quiescent Pancreatic Progenitors that Promote Injury-Induced Regeneration and Tumorigenesis.. Cell Stem Cell. 18 (4) :441-55 Go to Pubmed
Sophie Zaaijer, Yaniv Erlich .  2016.   Using mobile sequencers in an academic classroom.. Elife. 5 Go to Pubmed
Mi-Jeong Park, Ren Sheng, Antonina Silkov, Da-Jung Jung, Zhi-Gang Wang, Yao Xin, Hyunjin Kim, Pallavi Thiagarajan-Rosenkranz, Seohyeon Song, Youngdae Yoon, Wonhee Nam, Ilshin Kim, Eui Kim, Dong-Gyu Lee, Yong Chen, Indira Singaram, Li Wang, Myoung Jang, Cheol-Sang Hwang, Barry Honig, Sungho Ryu, Justin Lorieau, You-Me Kim, Wonhwa Cho .  2016.   SH2 Domains Serve as Lipid-Binding Modules for pTyr-Signaling Proteins.. Mol Cell. 62 (1) :7-20 Go to Pubmed
Hon Chan, Siying Ma, Kam Leong .  2016.   Can microfluidics address biomanufacturing challenges in drug/gene/cell therapies?. Regen Biomater. 3 (2) :87-98 Go to Pubmed
Erica Peters, Nicolas Christoforou, Kam Leong, George Truskey, Jennifer West .  2016.   Poly(ethylene glycol) Hydrogel Scaffolds Containing Cell-Adhesive and Protease-Sensitive Peptides Support Microvessel Formation by Endothelial Progenitor Cells.. Cell Mol Bioeng. 9 (1) :38-54 Go to Pubmed
Stefanie Widder, Rosalind Allen, Thomas Pfeiffer, Thomas Curtis, Carsten Wiuf, William Sloan, Otto Cordero, Sam Brown, Babak Momeni, Wenying Shou, Helen Kettle, Harry Flint, Andreas Haas, Béatrice Laroche, Jan-Ulrich Kreft, Paul Rainey, Shiri Freilich, Stefan Schuster, Kim Milferstedt, Jan van der Meer, Tobias Groβkopf, Jef Huisman, Andrew Free, Cristian Picioreanu, Christopher Quince, Isaac Klapper, Simon Labarthe, Barth Smets, Harris Wang, Isaac Fellows, Orkun Soyer .  2016.   Challenges in microbial ecology: building predictive understanding of community function and dynamics.. ISME J. Go to Pubmed
Nir Nissim, Mary Boland, Nicholas Tatonetti, Yuval Elovici, George Hripcsak, Yuval Shahar, Robert Moskovitch .  2016.   Improving Condition Severity Classification with an Efficient Active Learning Based Framework.. J Biomed Inform. Go to Pubmed
Rebecca Lescarbeau, Liang Lei, Katrina Bakken, Peter Sims, Jann Sarkaria, Peter Canoll, Forest White .  2016.   Quantitative phosphoproteomics reveals Wee1 kinase as a therapeutic target in a model of proneural glioblastoma.. Mol Cancer Ther. Go to Pubmed
Paula van Mourik, Jannie de Jong, Danielle Agpalo, Clémence Claussin, Rodney Rothstein, Michael Chang .  2016.   Recombination-Mediated Telomere Maintenance in Saccharomyces cerevisiae Is Not Dependent on the Shu Complex.. PLoS One. 11 (3) :e0151314 Go to Pubmed
Oliver Hobert .  2016.   Terminal Selectors of Neuronal Identity.. Curr Top Dev Biol. 116 :455-75 Go to Pubmed
Mina Fazlollahi, Ivor Muroff, Eunjee Lee, Helen Causton, Harmen Bussemaker .  2016.   Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets.. Proc Natl Acad Sci U S A. Go to Pubmed
Sebastien Weyn-Vanhentenryck, Chaolin Zhang .  2016.   mCarts: Genome-Wide Prediction of Clustered Sequence Motifs as Binding Sites for RNA-Binding Proteins.. Methods Mol Biol. 1421 :215-26 Go to Pubmed
Paola Nicoletti, Anneke Werk, Ashley Sawle, Yufeng Shen, Thomas Urban, Sally Coulthard, Einar Bjornsson, Ingolf Cascorbi, Aris Floratos, Thomas Stammschulte, Ursula Gundert-Remy, Matthew Nelson, Guruprasad Aithal, Ann Daly, International Consortium .  2016.   HLA-DRB1*16: 01-DQB1*05: 02 is a novel genetic risk factor for flupirtine-induced liver injury.. Pharmacogenet Genomics. 26 (5) :218-24 Go to Pubmed
Habte Nida, Shula Blum, Dina Zielinski, Dhruv Srivastava, Rivka Elbaum, Zhanguo Xin, Yaniv Erlich, Eyal Fridman, Noam Shental .  2016.   Highly efficient de novo mutant identification in a Sorghum bicolor TILLING population using the ComSeq approach.. Plant J. Go to Pubmed
Fernanda Polubriaginof, Nicholas Tatonetti, David Vawdrey .  2015.   An Assessment of Family History Information Captured in an Electronic Health Record.. AMIA Annu Symp Proc. 2015 :2035-42 Go to Pubmed
Roumen Voutev, Richard Mann .  2016.   Streamlined scanning for enhancer elements in Drosophila melanogaster.. Biotechniques. 60 (3) :141-4 Go to Pubmed
Keith Hoffman, Mo Dimbil, Nicholas Tatonetti, Robert Kyle .  2016.   A Pharmacovigilance Signaling System Based on FDA Regulatory Action and Post-Marketing Adverse Event Reports.. Drug Saf. Go to Pubmed
Shuqiang Huang, Anna Lee, Ryan Tsoi, Feilun Wu, Ying Zhang, Kam Leong, Lingchong You .  2016.   Coupling spatial segregation with synthetic circuits to control bacterial survival.. Mol Syst Biol. 12 (2) :859 Go to Pubmed
Ravi Sheth, Vitor Cabral, Sway Chen, Harris Wang .  2016.   Manipulating Bacterial Communities by in situ Microbiome Engineering.. Trends Genet. Go to Pubmed
Steven Hill, Laura Heiser, Thomas Cokelaer, Michael Unger, Nicole Nesser, Daniel Carlin, Yang Zhang, Artem Sokolov, Evan Paull, Chris Wong, Kiley Graim, Adrian Bivol, Haizhou Wang, Fan Zhu, Bahman Afsari, Ludmila Danilova V, Alexander Favorov V, Wai Lee, Dane Taylor, Chenyue Hu, Byron Long, David Noren, Alexander Bisberg, HPN-DREAM Consortium, Gordon Mills, Joe Gray, Michael Kellen, Thea Norman, Stephen Friend, Amina Qutub, Elana Fertig, Yuanfang Guan, Mingzhou Song, Joshua Stuart, Paul Spellman, Heinz Koeppl, Gustavo Stolovitzky, Julio Saez-Rodriguez, Sach Mukherjee .  2016.   Inferring causal molecular networks: empirical assessment through a community-based effort.. Nat Methods. 13 (4) :310-8 Go to Pubmed
Clémentine Le Magnen, Aditya Dutta, Cory Abate-Shen .  2016.   Optimizing mouse models for precision cancer prevention.. Nat Rev Cancer. Go to Pubmed
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