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Vez Repunte-Canonigo, Celine Lefebvre, Olivier George, Tomoya Kawamura, Marisela Morales, George Koob, Andrea Califano, Eliezer Masliah, Pietro Sanna .  2014.   Gene expression changes consistent with neuroAIDS and impaired working memory in HIV-1 transgenic rats.. Mol Neurodegener. 9 :26 ▶ Go to Pubmed
Hiyaa Ghosh, Michele Ceribelli, Ines Matos, Allan Lazarovici, Harmen Bussemaker, Anna Lasorella, Scott Hiebert, Kang Liu, Louis Staudt, Boris Reizis .  2014.   ETO family protein Mtg16 regulates the balance of dendritic cell subsets by repressing Id2.. J Exp Med. ▶ Go to Pubmed
The Consortium .  2014.   Whole-genome sequence variation, population structure and demographic history of the Dutch population.. Nat Genet. ▶ Go to Pubmed
Lucas Ward, Junbai Wang, Harmen Bussemaker .  2014.   Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast.. BMC Genomics. 15 (1) :494 ▶ Go to Pubmed
Semanti Mukherjee, Saurav Guha, Masashi Ikeda, Nakao Iwata, Anil Malhotra, Itsik Pe'er, Ariel Darvasi, Todd Lencz .  2014.   Excess of homozygosity in the major histocompatibility complex in schizophrenia.. Hum Mol Genet. ▶ Go to Pubmed
Mina Fazlollahi, Eunjee Lee, Ivor Muroff, Xiang-Jun Lu, Pilar Gomez-Alcala, Helen Causton, Harmen Bussemaker .  2014.   Harnessing Natural Sequence Variation to Dissect Post-Transcriptional Regulatory Networks in Yeast.. G3 (Bethesda). ▶ Go to Pubmed
Giuliano Sciara, Oliver Clarke, David Tomasek, Brian Kloss, Shantelle Tabuso, Rushelle Byfield, Raphael Cohn, Surajit Banerjee, Kanagalaghatta Rajashankar, Vesna Slavkovic, Joseph Graziano, Lawrence Shapiro, Filippo Mancia .  2014.   Structural basis for catalysis in a CDP-alcohol phosphotransferase.. Nat Commun. 5 :4068 ▶ Go to Pubmed
Yibing Shan, Kavitha Gnanasambandan, Daniela Ungureanu, Eric Kim, Henrik Hammarén, Kazuo Yamashita, Olli Silvennoinen, David Shaw, Stevan Hubbard .  2014.   Molecular basis for pseudokinase-dependent autoinhibition of JAK2 tyrosine kinase.. Nat Struct Mol Biol. ▶ Go to Pubmed
Donald Petrey, Barry Honig .  2014.   Structural bioinformatics of the interactome.. Annu Rev Biophys. 43 :193-210 ▶ Go to Pubmed
James Costello, Laura Heiser, Elisabeth Georgii, Mehmet Gönen, Michael Menden, Nicholas Wang, Mukesh Bansal, Muhammad Ammad-Ud-Din, Petteri Hintsanen, Suleiman Khan, John-Patrick Mpindi, Olli Kallioniemi, Antti Honkela, Tero Aittokallio, Krister Wennerberg, NCI Community, James Collins, Dan Gallahan, Dinah Singer, Julio Saez-Rodriguez, Samuel Kaski, Joe Gray, Gustavo Stolovitzky .  2014.   A community effort to assess and improve drug sensitivity prediction algorithms.. Nat Biotechnol. ▶ Go to Pubmed
Milan Stojanovic, Darko Stefanovic, Sergei Rudchenko .  2014.   Exercises in Molecular Computing.. Acc Chem Res. ▶ Go to Pubmed
Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang .  2014.   A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data.. EURASIP J Bioinform Syst Biol. 2014 (1) :7 ▶ Go to Pubmed
Mads Bonde, Sriram Kosuri, Hans Genee, Kira Sarup-Lytzen, George Church, Morten Sommer, Harris Wang .  2014.   Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides.. ACS Synth Biol. ▶ Go to Pubmed
Scott Dixon, Darpan Patel, Matthew Welsch, Rachid Skouta, Eric Lee, Miki Hayano, Ajit Thomas, Caroline Gleason, Nicholas Tatonetti, Barbara Slusher, Brent Stockwell .  2014.   Pharmacological inhibition of cystine-glutamate exchange induces endoplasmic reticulum stress and ferroptosis.. Elife. :e02523 ▶ Go to Pubmed
Vladimir Vacic, Laurie Ozelius, Lorraine Clark, Anat Bar-Shira, Mali Gana-Weisz, Tanya Gurevich, Alexander Gusev, Merav Kedmi, Eimear Kenny, Xinmin Liu, Helen Mejia-Santana, Anat Mirelman, Deborah Raymond, Rachel Saunders-Pullman, Robert Desnick, Gil Atzmon, Edward Burns, Harry Ostrer, Hakon Hakonarson, Aviv Bergman, Nir Barzilai, Ariel Darvasi, Inga Peter, Saurav Guha, Todd Lencz, Nir Giladi, Karen Marder, Itsik Pe'er, Susan Bressman, Avi Orr-Urtreger .  2014.   Genome-wide mapping of IBD segments in an Ashkenazi PD cohort identifies associated haplotypes.. Hum Mol Genet. ▶ Go to Pubmed
Stephanie Yaung, George Church, Harris Wang .  2014.   Recent progress in engineering human-associated microbiomes.. Methods Mol Biol. 1151 :3-25 ▶ Go to Pubmed
Iraz Aydin, Rachel Melamed, Sarah Adams, Mireia Castillo-Martin, Ahu Demir, Diana Bryk, Georg Brunner, Carlos Cordon-Cardo, Iman Osman, Raul Rabadan, Julide Celebi .  2014.   FBXW7 Mutations in Melanoma and a New Therapeutic Paradigm.. J Natl Cancer Inst. 106 (6) ▶ Go to Pubmed
Mads Bonde, Michael Klausen, Mads Anderson V, Annika Wallin, Harris Wang, Morten Sommer .  2014.   MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering.. Nucleic Acids Res. ▶ Go to Pubmed
Y Shetzer, S Kagan, G Koifman, R Sarig, I Kogan-Sakin, M Charni, T Kaufman, M Zapatka, A Molchadsky, N Rivlin, N Dinowitz, S Levin, G Landan, I Goldstein, N Goldfinger, Dana Pe'er, B Radlwimmer, P Lichter, Rotter V, R Aloni-Grinstein .  2014.   The onset of p53 loss of heterozygosity is differentially induced in various stem cell types and may involve the loss of either allele.. Cell Death Differ. ▶ Go to Pubmed
Alvaro Aytes, Antonina Mitrofanova, Celine Lefebvre, Mariano Alvarez, Mireia Castillo-Martin, Tian Zheng, James Eastham, Anuradha Gopalan, Kenneth Pienta, Michael Shen, Andrea Califano, Cory Abate-Shen .  2014.   Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy.. Cancer Cell. 25 (5) :638-51 ▶ Go to Pubmed
Li Li, David Ruau, Chirag Patel, Susan Weber, Rong Chen, Nicholas Tatonetti, Joel Dudley, Atul Butte .  2014.   Disease risk factors identified through shared genetic architecture and electronic medical records.. Sci Transl Med. 6 (234) :234ra57 ▶ Go to Pubmed
Andrea Califano, Manolis Kellis, Gustavo Stolovitzky .  2014.   RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue.. J Comput Biol. 21 (5) :371-2 ▶ Go to Pubmed
Giovanna Delogu, Silvia Serra, Elias Quezada, Eugenio Uriarte, Santiago Vilar, Nicholas Tatonetti, Dolores Viña .  2014.   Monoamine Oxidase (MAO) Inhibitory Activity: 3-Phenylcoumarins versus 4-Hydroxy-3-phenylcoumarins.. ChemMedChem. ▶ Go to Pubmed
Michael Mee, James Collins, George Church, Harris Wang .  2014.   Syntrophic exchange in synthetic microbial communities.. Proc Natl Acad Sci U S A. ▶ Go to Pubmed
Andrew Brown, Alfonso Buil, Ana Viñuela, Tuuli Lappalainen, Hou-Feng Zheng, Brent Richards, Kerrin Small, Timothy Spector, Emmanouil Dermitzakis, Richard Durbin .  2014.   Genetic interactions affecting human gene expression identified by variance association mapping.. Elife. 3 :e01381 ▶ Go to Pubmed
Daniel Backenroth, Jason Homsy, Laura Murillo, Joe Glessner, Edwin Lin, Martina Brueckner, Richard Lifton, Elizabeth Goldmuntz, Wendy Chung, Yufeng Shen .  2014.   CANOES: detecting rare copy number variants from whole exome sequencing data.. Nucleic Acids Res. ▶ Go to Pubmed
Sean Bendall, Kara Davis, El-Ad Amir, Michelle Tadmor, Erin Simonds, Tiffany Chen, Daniel Shenfeld, Garry Nolan, Dana Pe'er .  2014.   Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.. Cell. 157 (3) :714-25 ▶ Go to Pubmed
Chris Miller, Jason Thorpe, Amanda Kortum, Catherine Coy, Wei-Yi Cheng, Tai-Hsien Yang, Dimitris Anastassiou, David Beatty, Nicole Urban, Anthony Blau .  2014.   JAK2 expression is associated with tumor-infiltrating lymphocytes and improved breast cancer outcomes: implications for evaluating JAK2 inhibitors.. Cancer Immunol Res. 2 (4) :301-6 ▶ Go to Pubmed
Maria Matos, Santiago Vilar, Verónica García-Morales, Nicholas Tatonetti, Eugenio Uriarte, Lourdes Santana, Dolores Viña .  2014.   Insight into the Functional and Structural Properties of 3-Arylcoumarin as an Interesting Scaffold in Monoamine Oxidase B Inhibition.. ChemMedChem. ▶ Go to Pubmed
Eunjee Lee, Jeroen de Ridder, Jaap Kool, Lodewyk Wessels, Harmen Bussemaker .  2014.   Identifying regulatory mechanisms underlying tumorigenesis using locus expression signature analysis.. Proc Natl Acad Sci U S A. 111 (15) :5747-52 ▶ Go to Pubmed
Richard Mann .  2014.   Neuroscience. The Michael Jackson fly.. Science. 344 (6179) :48-9 ▶ Go to Pubmed
Amir Kermany, Laure Segurel, Tiffany Oliver, Molly Przeworski .  2014.   TroX: a new method to learn about the genesis of aneuploidy from trisomic products of conception.. Bioinformatics. ▶ Go to Pubmed
Panos Oikonomou, Hani Goodarzi, Saeed Tavazoie .  2014.   Systematic Identification of Regulatory Elements in Conserved 3' UTRs of Human Transcripts.. Cell Rep. ▶ Go to Pubmed
Jan-Willem van de Meent, Jonathan Bronson, Chris Wiggins, Ruben Gonzalez .  2014.   Empirical Bayes Methods Enable Advanced Population-Level Analyses of Single-Molecule FRET Experiments.. Biophys J. 106 (6) :1327-37 ▶ Go to Pubmed
Keith Hoffman, Mo Dimbil, Colin Erdman, Nicholas Tatonetti, Brian Overstreet .  2014.   The Weber Effect and the United States Food and Drug Administration's Adverse Event Reporting System (FAERS): Analysis of Sixty-Two Drugs Approved from 2006 to 2010.. Drug Saf. ▶ Go to Pubmed
Adam Sonabend, Arthur Carminucci, Benjamin Amendolara, Mukesh Bansal, Richard Leung, Liang Lei, Ronald Realubit, Hai Li, Charles Karan, Jonathan Yun, Christopher Showers, Robert Rothcock, Jane O, Andrea Califano, Peter Canoll, Jeffrey Bruce .  2014.   Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma.. Neuro Oncol. ▶ Go to Pubmed
David Llobet-Navas, Ruth Rodriguez-Barrueco, Verónica Castro, Alejandro Ugalde, Pavel Sumazin, Damian Jacob-Sendler, Berna Demircan, Mireia Castillo-Martin, Preeti Putcha, Netonia Marshall, Patricia Villagrasa, Joseph Chan, Felix Sanchez-Garcia, Dana Pe'er, Raul Rabadan, Antonio Iavarone, Carlos Cordon-Cardo, Andrea Califano, Carlos López-Otín, Elena Ezhkova, Jose Silva .  2014.   The miR-424(322)/503 cluster orchestrates remodeling of the epithelium in the involuting mammary gland.. Genes Dev. ▶ Go to Pubmed
Maria Matos, Patricia Janeiro, Rosa Franco, Santiago Vilar, Nicholas Tatonetti, Lourdes Santana, Eugenio Uriarte, Fernanda Borges, José Fontenla, Dolores Viña .  2014.   Synthesis, pharmacological study and docking calculations of new benzo[f]coumarin derivatives as dual inhibitors of enzymatic systems involved in neurodegenerative diseases.. Future Med Chem. 6 (4) :371-83 ▶ Go to Pubmed
Christopher Sundling, Zhenhai Zhang, Ganesh Phad, Zizhang Sheng, Yimeng Wang, John Mascola, Yuxing Li, Richard Wyatt, Lawrence Shapiro, Gunilla Hedestam .  2014.   Single-Cell and Deep Sequencing of IgG-Switched Macaque B Cells Reveal a Diverse Ig Repertoire following Immunization.. J Immunol. ▶ Go to Pubmed
Sebastien Weyn-Vanhentenryck, Aldo Mele, Qinghong Yan, Shuying Sun, Natalie Farny, Zuo Zhang, Chenghai Xue, Margaret Herre, Pamela Silver, Michael Zhang, Adrian Krainer, Robert Darnell, Chaolin Zhang .  2014.   HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism.. Cell Rep. ▶ Go to Pubmed
Rachid Skouta, Scott Dixon, Jianlin Wang, Denise Dunn, Marina Orman, Kenichi Shimada, Paul Rosenberg, Donald Lo, Joel Weinberg, Andreas Linkermann, Brent Stockwell .  2014.   Ferrostatins inhibit oxidative lipid damage and cell death in diverse disease models.. J Am Chem Soc. ▶ Go to Pubmed
Vladimir Trifonov, Laura Pasqualucci, Enrico Tiacci, Brunangelo Falini, Raul Rabadan .  2013.   SAVI: a statistical algorithm for variant frequency identification.. BMC Syst Biol. 7 Suppl 2 :S2 ▶ Go to Pubmed
Monica Messina, Ilaria Del Giudice, Hossein Khiabanian, Davide Rossi, Sabina Chiaretti, Silvia Rasi, Valeria Spina, Antony Holmes, Marilisa Marinelli, Giulia Fabbri, Alfonso Piciocchi, Francesca Mauro, Anna Guarini, Gianluca Gaidano, Riccardo Dalla-Favera, Laura Pasqualucci, Raul Rabadan, Robin Foá .  2014.   Genetic lesions associated with chronic lymphocytic leukemia chemo-refractoriness.. Blood. ▶ Go to Pubmed
Fei Song, Carmen Del Pozo, Rosa Rosario, Yu Zou, Radha Ananthakrishnan, Xiaoyuan Xu, Payal Patel, Vivian Benoit, Shi Yan, Huilin Li, Richard Friedman, Jason Kim, Ravichandran Ramasamy, Anthony Ferrante, Ann Schmidt .  2014.   RAGE Regulates the Metabolic and Inflammatory Response to High Fat Feeding in Mice.. Diabetes. ▶ Go to Pubmed
Konrad Karczewski, Michael Snyder, Russ Altman, Nicholas Tatonetti .  2014.   Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association.. PLoS Genet. 10 (2) :e1004122 ▶ Go to Pubmed
In Jang, Adam Margolin, Andrea Califano .  2013.   hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests.. Interface Focus. 3 (4) :20130011 ▶ Go to Pubmed
Davide Rossi, Hossein Khiabanian, Valeria Spina, Carmela Ciardullo, Alessio Bruscaggin, Rosella Famà, Silvia Rasi, Sara Monti, Clara Deambrogi, Lorenzo De Paoli, Jiguang Wang, Valter Gattei, Anna Guarini, Robin Foá, Raul Rabadan, Gianluca Gaidano .  2014.   Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia.. Blood. ▶ Go to Pubmed
Mitja Kurki, Emília Gaál, Johannes Kettunen, Tuuli Lappalainen, Androniki Menelaou, Verneri Anttila, Femke Hof, Mikael Fraunberg, Seppo Helisalmi, Mikko Hiltunen, Hanna Lehto, Aki Laakso, Riku Kivisaari, Timo Koivisto, Antti Ronkainen, Jaakko Rinne, Lambertus Kiemeney, Sita Vermeulen, Mari Kaunisto, Johan Eriksson, Arpo Aromaa, Markus Perola, Terho Lehtimäki, Olli Raitakari, Veikko Salomaa, Murat Gunel, Emmanouil Dermitzakis, Ynte Ruigrok, Gabriel Rinkel, Mika Niemelä, Juha Hernesniemi, Samuli Ripatti, Paul de Bakker, Aarno Palotie, Juha Jääskeläinen .  2014.   High risk population isolate reveals low frequency variants predisposing to intracranial aneurysms.. PLoS Genet. 10 (1) :e1004134 ▶ Go to Pubmed
Stefano Piana, John Klepeis, David Shaw .  2014.   Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations.. Curr Opin Struct Biol. 24C :98-105 ▶ Go to Pubmed
Yakov Chudnovsky, Dohoon Kim, Siyuan Zheng, Warren Whyte, Mukesh Bansal, Mark-Anthony Bray, Shuba Gopal, Matthew Theisen, Steve Bilodeau, Prathapan Thiru, Julien Muffat, Omer Yilmaz, Maya Mitalipova, Kevin Woolard, Jeongwu Lee, Riko Nishimura, Nobuo Sakata, Howard Fine, Anne Carpenter, Serena Silver, Roel Verhaak, Andrea Califano, Richard Young, Keith Ligon, Ingo Mellinghoff, David Root, David Sabatini, William Hahn, Milan Chheda .  2014.   ZFHX4 Interacts with the NuRD Core Member CHD4 and Regulates the Glioblastoma Tumor-Initiating Cell State.. Cell Rep. ▶ Go to Pubmed
Wan Yang, Rohitha Sriramaratnam, Matthew Welsch, Kenichi Shimada, Rachid Skouta, Vasanthi Viswanathan, Jaime Cheah, Paul Clemons, Alykhan Shamji, Clary Clish, Lewis Brown, Albert Girotti, Virginia Cornish, Stuart Schreiber, Brent Stockwell .  2014.   Regulation of Ferroptotic Cancer Cell Death by GPX4.. Cell. 156 (1-2) :317-31 ▶ Go to Pubmed
Aruna Kode, John Manavalan, Ioanna Mosialou, Govind Bhagat, Chozha Rathinam V, Na Luo, Hossein Khiabanian, Albert Lee, Vundavalli Murty V, Richard Friedman, Andrea Brum, David Park, Naomi Galili, Siddhartha Mukherjee, Julie Teruya-Feldstein, Azra Raza, Raul Rabadan, Ellin Berman, Stavroula Kousteni .  2014.   Leukaemogenesis induced by an activating β-catenin mutation in osteoblasts.. Nature. ▶ Go to Pubmed
Teresa Palomero, Lucile Couronné, Hossein Khiabanian, Mi-Yeon Kim, Alberto Ambesi-Impiombato, Arianne Perez-Garcia, Zachary Carpenter, Francesco Abate, Maddalena Allegretta, Erika Haydu, Xiaoyu Jiang, Izidore Lossos, Concha Nicolas, Milagros Balbin, Christian Bastard, Govind Bhagat, Miguel Piris, Elias Campo, Olivier Bernard, Raul Rabadan, Adolfo Ferrando .  2014.   Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas.. Nat Genet. ▶ Go to Pubmed
Michael Moore, Chaolin Zhang, Emily Gantman, Aldo Mele, Jennifer Darnell, Robert Darnell .  2014.   Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.. Nat Protoc. 9 (2) :263-93 ▶ Go to Pubmed
Ronald Tepper, Coleen Murphy, Harmen Bussemaker .  2014.   DAF-16 and PQM-1: Partners in longevity.. Aging (Albany NY). ▶ Go to Pubmed
Adam Sonabend, Mukesh Bansal, Paolo Guarnieri, Liang Lei, Benjamin Amendolara, Craig Soderquist, Richard Leung, Jonathan Yun, Benjamin Kennedy, Julia Sisti, Samuel Bruce, Rachel Bruce, Reena Shakya, Thomas Ludwig, Steven Rosenfeld, Peter Sims, Jeffrey Bruce, Andrea Califano, Peter Canoll .  2014.   The Transcriptional Regulatory Network of Proneural Glioma Determines the Genetic Alterations Selected During Tumor Progression.. Cancer Res. ▶ Go to Pubmed
Laura Pasqualucci, Hossein Khiabanian, Marco Fangazio, Mansi Vasishtha, Monica Messina, Antony Holmes, Peter Ouillette, Vladimir Trifonov, Davide Rossi, Fabrizio Tabbò, Maurilio Ponzoni, Amy Chadburn, Vundavalli Murty V, Govind Bhagat, Gianluca Gaidano, Giorgio Inghirami, Sami Malek, Raul Rabadan, Riccardo Dalla-Favera .  2014.   Genetics of follicular lymphoma transformation.. Cell Rep. 6 (1) :130-40 ▶ Go to Pubmed
Lan Yu, James Bennett, Julia Wynn, Gemma Carvill, Yee Cheung, Yufeng Shen, George Mychaliska, Kenneth Azarow, Timothy Crombleholme, Dai Chung, Douglas Potoka, Brad Warner, Brian Bucher, Foong-Yen Lim, John Pietsch, Charles Stolar, Gudrun Aspelund, Marc Arkovitz, University Genomics, Heather Mefford, Wendy Chung .  2014.   Whole exome sequencing identifies de novo mutations in GATA6 associated with congenital diaphragmatic hernia.. J Med Genet. ▶ Go to Pubmed
Scott Dixon, Brent Stockwell .  2013.   The Role of Iron and Reactive Oxygen Secies in Cell Death.. Nat Chem Biol. 10 (1) :9-17 ▶ Go to Pubmed
Liang Liu, Hyunmi Kim, Alex Casta, Yuki Kobayashi, Lawrence Shapiro, Angela Christiano .  2013.   Hairless Is a Histone H3K9 Demethylase.. FASEB J. ▶ Go to Pubmed
Marie Harton, Laura Wingler, Virginia Cornish .  2013.   Transcriptional regulation improves the throughput of three-hybrid counter selections in Saccharomyces cerevisiae.. Biotechnol J. 8 (12) :1485-91 ▶ Go to Pubmed
Peter Freddolino, Hani Goodarzi, Saeed Tavazoie .  2013.   Revealing the Genetic Basis of Natural Bacterial Phenotypic Divergence.. J Bacteriol. ▶ Go to Pubmed
Erich Piovan, Jiyang Yu, Valeria Tosello, Daniel Herranz, Alberto Ambesi-Impiombato, Ana Da Silva, Marta Sanchez-Martin, Arianne Perez-Garcia, Isaura Rigo, Mireia Castillo-Martin, Stefano Indraccolo, Justin Cross, Elisa de Stanchina, Elisabeth Paietta, Janis Racevskis, Jacob Rowe, Martin Tallman, Giuseppe Basso, Jules Meijerink, Carlos Cordon-Cardo, Andrea Califano, Adolfo Ferrando .  2013.   Direct Reversal of Glucocorticoid Resistance by AKT Inhibition in Acute Lymphoblastic Leukemia.. Cancer Cell. 24 (6) :766-76 ▶ Go to Pubmed
Germán Plata, Dennis Vitkup .  2013.   Genetic Robustness and Functional Evolution of Gene Duplicates.. Nucleic Acids Res. ▶ Go to Pubmed
Shula Shazman, Hunjoong Lee, Yakov Socol, Richard Mann, Barry Honig .  2014.   OnTheFly: a Database of Drosophila melanogaster Transcription Factors and Their Binding Sites.. Nucleic Acids Res. 42 (1) :D167-71 ▶ Go to Pubmed
Sebastian Waszak, Helena Kilpinen, Andreas Gschwind, Andrea Orioli, Sunil Raghav, Robert Witwicki, Eugenia Migliavacca, Alisa Yurovsky, Tuuli Lappalainen, Nouria Hernandez, Alexandre Reymond, Emmanouil Dermitzakis, Bart Deplancke .  2014.   Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.. Bioinformatics. 30 (2) :165-71 ▶ Go to Pubmed
Todd Lencz, Saurav Guha, Chunyu Liu, Jeffrey Rosenfeld, Semanti Mukherjee, Pamela Derosse, Majnu John, Lijun Cheng, Chunling Zhang, Judith Badner, Masashi Ikeda, Nakao Iwata, Sven Cichon, Marcella Rietschel, Markus Nöthen, A Cheng, Colin Hodgkinson, Qiaoping Yuan, John Kane, Annette Lee, Anne Pisanté, Peter Gregersen, Itsik Pe'er, Anil Malhotra, David Goldman, Ariel Darvasi .  2013.   Genome-wide association study implicates NDST3 in schizophrenia and bipolar disorder.. Nat Commun. 4 :2739 ▶ Go to Pubmed
Sabine Becker-Weimann, Gaofeng Xiong, Saori Furuta, Ju Han, Irene Kuhn, Uri Akavia, Dana Pe'er, Mina Bissell, Ren Xu .  2013.   NFkB disrupts tissue polarity in 3D by preventing integration of microenvironmental signals.. Oncotarget. ▶ Go to Pubmed
Elijah Behr, Marylyn Ritchie, Toshihiro Tanaka, Stefan Kääb, Dana Crawford, Paola Nicoletti, Aris Floratos, Moritz Sinner, Prince Kannankeril, Arthur Wilde, Connie Bezzina, Eric Schulze-Bahr, Sven Zumhagen, Pascale Guicheney, Nanette Bishopric, Vanessa Marshall, Saad Shakir, Chrysoula Dalageorgou, Steve Bevan, Yalda Jamshidi, Rachel Bastiaenen, Robert Myerburg, Jean-Jacques Schott, John Camm, Gerhard Steinbeck, Kris Norris, Russ Altman, Nicholas Tatonetti, Steve Jeffery, Michiaki Kubo, Yusuke Nakamura, Yufeng Shen, Alfred George, Dan Roden .  2013.   Genome wide analysis of drug-induced torsades de pointes: lack of common variants with large effect sizes.. PLoS One. 8 (11) :e78511 ▶ Go to Pubmed
Ross Lippert, Cristian Predescu, Douglas Ierardi, Kenneth Mackenzie, Michael Eastwood, Ron Dror, David Shaw .  2013.   Accurate and efficient integration for molecular dynamics simulations at constant temperature and pressure.. J Chem Phys. 139 (16) :164106 ▶ Go to Pubmed
Cory Abate-Shen, PP Pandolfi .  2013.   Effective utilization and appropriate selection of genetically engineered mouse models for translational integration of mouse and human trials.. Cold Spring Harb Protoc. 2013 (11) ▶ Go to Pubmed
Joseph Chan, Gunnar Carlsson, Raul Rabadan .  2013.   Topology of viral evolution.. Proc Natl Acad Sci U S A. 110 (46) :18566-71 ▶ Go to Pubmed
sbv team, Sam Ansari, Jean Binder, Stephanie Boue, Anselmo Di Fabio, William Hayes, Julia Hoeng, Anita Iskandar, Robin Kleiman, Raquel Norel, Bruce O'Neel, Manuel Peitsch, Carine Poussin, Dexter Pratt, Kahn Rhrissorrakrai, Walter Schlage, Gustavo Stolovitzky, Marja Talikka .  2013.   On crowd-verification of biological networks.. Bioinform Biol Insights. 7 :307-25 ▶ Go to Pubmed
Giulia Fabbri, Hossein Khiabanian, Antony Holmes, Jiguang Wang, Monica Messina, Charles Mullighan, Laura Pasqualucci, Raul Rabadan, Riccardo Dalla-Favera .  2013.   Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome.. J Exp Med. 210 (11) :2273-88 ▶ Go to Pubmed
Ron Dror, Hillary Green, Celine Valant, David Borhani, James Valcourt, Albert Pan, Daniel Arlow, Meritxell Canals, Robert Lane, Raphaël Rahmani, Jonathan Baell, Patrick Sexton, Arthur Christopoulos, David Shaw .  2013.   Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs.. Nature. 503 (7475) :295-9 ▶ Go to Pubmed
Charles Leduc, Elizabeth Crouch, Ashley Wilson, Jay Lefkowitch, Mirjam Wamelink, Cornelis Jakobs, Gajja Salomons, Xiaoyun Sun, Yufeng Shen, Wendy Chung .  2013.   Novel association of early onset hepatocellular carcinoma with transaldolase deficiency.. JIMD Rep. ▶ Go to Pubmed
Xiaochen Sun, Santiago Vilar, Nicholas Tatonetti .  2013.   High-throughput methods for combinatorial drug discovery.. Sci Transl Med. 5 (205) :205rv1 ▶ Go to Pubmed
David Blair, Christopher Lyttle, Jonathan Mortensen, Charles Bearden, Anders Jensen, Hossein Khiabanian, Rachel Melamed, Raul Rabadan, Elmer Bernstam V, Søren Brunak, Lars Jensen, Dan Nicolae, Nigam Shah, Robert Grossman, Nancy Cox, Kevin White, Andrey Rzhetsky .  2013.   A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.. Cell. 155 (1) :70-80 ▶ Go to Pubmed
Cancer Network, John Weinstein, Eric Collisson, Gordon Mills, Kenna Shaw, Brad Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua Stuart .  2013.   The Cancer Genome Atlas Pan-Cancer Analysis Project.. Nat Genet. 45 (10) :1113-20 ▶ Go to Pubmed
Julien Gagneur, Oliver Stegle, Chenchen Zhu, Petra Jakob, Manu Tekkedil, Raeka Aiyar, Ann-Kathrin Schuon, Dana Pe'er, Lars Steinmetz .  2013.   Genotype-environment interactions reveal causal pathways that mediate genetic effects on phenotype.. PLoS Genet. 9 (9) :e1003803 ▶ Go to Pubmed
Ying Li, Nicole Altorelli, Fabiana Bahna, Barry Honig, Lawrence Shapiro, Arthur Palmer .  2013.   Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion.. Proc Natl Acad Sci U S A. 110 (41) :16462-7 ▶ Go to Pubmed
Sonia Hernandez, Debarshi Banerjee, Alejandro Garcia, Thaned Kangsamaksin, Wei-Yi Cheng, Dimitris Anastassiou, Yasuhiro Funahashi, Angela Kadenhe-Chiweshe, Carrie Shawber, Jan Kitajewski, Jessica Kandel, Darrell Yamashiro .  2013.   Notch and VEGF pathways play distinct but complementary roles in tumor angiogenesis.. Vasc Cell. 5 (1) :17 ▶ Go to Pubmed
Charles Sawyers, Cory Abate-Shen, Kenneth Anderson, Anna Barker, Jose Baselga, Nathan Berger, Margaret Foti, Ahmedin Jemal, Theodore Lawrence, Christopher Li, Elaine Mardis, Peter Neumann, Drew Pardoll, George Prendergast, John Reed, George Weiner, AACR Committee .  2013.   AACR Cancer Progress Report 2013.. Clin Cancer Res. 19 (20 Suppl) :S1-S98 ▶ Go to Pubmed
Gal Romano, Yaniv Harari, Tal Yehuda, Ariel Podhorzer, Linda Rubinstein, Ron Shamir, Assaf Gottlieb, Yael Silberberg, Dana Pe'er, Eytan Ruppin, Roded Sharan, Martin Kupiec .  2013.   Environmental stresses disrupt telomere length homeostasis.. PLoS Genet. 9 (9) :e1003721 ▶ Go to Pubmed
F Mancini, Chris Wiggins, M Marsili, A Walczak .  2013.   Time-dependent information transmission in a model regulatory circuit.. Phys Rev E Stat Nonlin Soft Matter Phys. 88 (2) :022708 ▶ Go to Pubmed
Lamont Barlow, Michael Shen .  2013.   SnapShot: Prostate cancer.. Cancer Cell. 24 (3) :400.e1 ▶ Go to Pubmed
Shazia Irshad, Mukesh Bansal, Mireia Castillo-Martin, Tian Zheng, Alvaro Aytes, Sven Wenske, Clémentine Le Magnen, Paolo Guarnieri, Pavel Sumazin, Mitchell Benson, Michael Shen, Andrea Califano, Cory Abate-Shen .  2013.   A molecular signature predictive of indolent prostate cancer.. Sci Transl Med. 5 (202) :202ra122 ▶ Go to Pubmed
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