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Junghyun Lim, Pankaj Giri, David Kazadi, Brice Laffleur, Wanwei Zhang, Veronika Grinstein, Evangelos Pefanis, Lewis Brown, Erik Ladewig, Ophélie Martin, Yuling Chen, Raul Rabadan, François Boyer, Gerson Rothschild, Michel Cogné, Eric Pinaud, Haiteng Deng, Uttiya Basu .  2017.   Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.. Cell. 169 (3) :523-537.e15 ▶ Go to Pubmed
Flaminia Talos, Antonina Mitrofanova, Sarah Bergren, Andrea Califano, Michael Shen .  2017.   A computational systems approach identifies synergistic specification genes that facilitate lineage conversion to prostate tissue.. Nat Commun. 8 :14662 ▶ Go to Pubmed
Takayuki Abe, Albert Lee, Ramaswami Sitharam, Jordan Kesner, Raul Rabadan, Sagi Shapira .  2017.   Germ-Cell-Specific Inflammasome Component NLRP14 Negatively Regulates Cytosolic Nucleic Acid Sensing to Promote Fertilization.. Immunity. 46 (4) :621-634 ▶ Go to Pubmed
Min Zou, Roxanne Toivanen, Antonina Mitrofanova, Nicolas Floch, Sheida Hayati, Yanping Sun, Clémentine Le Magnen, Daniel Chester, Elahe Mostaghel, Andrea Califano, Mark Rubin, Michael Shen, Cory Abate-Shen .  2017.   Transdifferentiation as a Mechanism of Treatment Resistance in a Mouse Model of Castration-Resistant Prostate Cancer.. Cancer Discov. 7 (7) :736-749 ▶ Go to Pubmed
Roxanne Toivanen, Michael Shen .  2017.   Prostate organogenesis: tissue induction, hormonal regulation and cell type specification.. Development. 144 (8) :1382-1398 ▶ Go to Pubmed
Aditya Dutta, Sukanya Panja, Renu Virk, Jaime Kim, Roseann Zott, Serge Cremers, David Golombos, Deli Liu, Juan Mosquera, Elahe Mostaghel, Christopher Barbieri, Antonina Mitrofanova, Cory Abate-Shen .  2017.   Co-clinical Analysis of a Genetically Engineered Mouse Model and Human Prostate Cancer Reveals Significance of NKX3.1 Expression for Response to 5α-reductase Inhibition.. Eur Urol. 72 (4) :499-506 ▶ Go to Pubmed
Tal Lorberbaum, Nicholas Tatonetti .  2017.   Reply: Combination Therapy With Ceftriaxone and Lansoprazole, Acquired Long QT Syndrome and Torsades de Pointes Risk.. J Am Coll Cardiol. 69 (14) :1877-1878 ▶ Go to Pubmed
James Xue, Todd Lencz, Ariel Darvasi, Itsik Pe'er, Shai Carmi .  2017.   The time and place of European admixture in Ashkenazi Jewish history.. PLoS Genet. 13 (4) :e1006644 ▶ Go to Pubmed
Xu Zhang, Tapan Maity, Manoj Kashyap, Mukesh Bansal, Abhilash Venugopalan, Sahib Singh, Shivangi Awasthi, Arivusudar Marimuthu, Harrys Jacob, Natalya Belkina, Stephanie Pitts, Constance Cultraro, Shaojian Gao, Guldal Kirkali, Romi Biswas, Raghothama Chaerkady, Andrea Califano, Akhilesh Pandey, Udayan Guha .  2017.   Quantitative Tyrosine Phosphoproteomics of Epidermal Growth Factor Receptor (EGFR) Tyrosine Kinase Inhibitor-treated Lung Adenocarcinoma Cells Reveals Potential Novel Biomarkers of Therapeutic Response.. Mol Cell Proteomics. 16 (5) :891-910 ▶ Go to Pubmed
Mauro Longoni, Frances High, Hongjian Qi, Maliackal Joy, Regis Hila, Caroline Coletti, Julia Wynn, Maria Loscertales, Linshan Shan, Carol Bult, Jay Wilson, Yufeng Shen, Wendy Chung, Patricia Donahoe .  2017.   Genome-wide enrichment of damaging de novo variants in patients with isolated and complex congenital diaphragmatic hernia.. Hum Genet. 136 (6) :679-691 ▶ Go to Pubmed
Dmytro Ustianenko, Sebastien Weyn-Vanhentenryck, Chaolin Zhang .  2017.   Microexons: discovery, regulation, and function.. Wiley Interdiscip Rev RNA. 8 (4) ▶ Go to Pubmed
Alexandre Fort, Nikolaos Panousis, Marco Garieri, Stylianos Antonarakis, Tuuli Lappalainen, Emmanouil Dermitzakis, Olivier Delaneau .  2017.   MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets.. Bioinformatics. 33 (12) :1895-1897 ▶ Go to Pubmed
Peter Kwong, Gwo-Yu Chuang, Brandon DeKosky, Tatyana Gindin, Ivelin Georgiev, Thomas Lemmin, Chaim Schramm, Zizhang Sheng, Cinque Soto, An-Suei Yang, John Mascola, Lawrence Shapiro .  2017.   Antibodyomics: bioinformatics technologies for understanding B-cell immunity to HIV-1.. Immunol Rev. 275 (1) :108-128 ▶ Go to Pubmed
Esther Lopez-Rivera, Yangfan Liu, Miguel Verbitsky, Blair Anderson, Valentina Capone, Edgar Otto, Zhonghai Yan, Adele Mitrotti, Jeremiah Martino, Nicholas Steers, David Fasel, Katarina Vukojevic, Rong Deng, Silvia Racedo, Qingxue Liu, Max Werth, Rik Westland, Asaf Vivante, Gabriel Makar, Monica Bodria, Matthew Sampson, Christopher Gillies, Virginia Vega-Warner, Mariarosa Maiorana, Donald Petrey, Barry Honig, Vladimir Lozanovski, Rémi Salomon, Laurence Heidet, Wassila Carpentier, Dominique Gaillard, Alba Carrea, Loreto Gesualdo, Daniele Cusi, Claudia Izzi, Francesco Scolari, Joanna van Wijk, Adela Arapovic, Mirna Saraga-Babic, Marijan Saraga, Nenad Kunac, Ali Samii, Donna McDonald-McGinn, Terrence Crowley, Elaine Zackai, Dorota Drozdz, Monika Miklaszewska, Marcin Tkaczyk, Przemyslaw Sikora, Maria Szczepanska, Malgorzata Mizerska-Wasiak, Grazyna Krzemien, Agnieszka Szmigielska, Marcin Zaniew, John Darlow, Prem Puri, David Barton, Emilio Casolari, Susan Furth, Bradley Warady, Zoran Gucev, Hakon Hakonarson, Hana Flogelova, Velibor Tasic, Anna Latos-Bielenska, Anna Materna-Kiryluk, Landino Allegri, Craig Wong, Iain Drummond, Vivette D'Agati, Akira Imamoto, Jonathan Barasch, Friedhelm Hildebrandt, Krzysztof Kiryluk, Richard Lifton, Bernice Morrow, Cecile Jeanpierre, Virginia Papaioannou, Gian Ghiggeri, Ali Gharavi, Nicholas Katsanis, Simone Sanna-Cherchi .  2017.   Genetic Drivers of Kidney Defects in the DiGeorge Syndrome.. N Engl J Med. ▶ Go to Pubmed
Roumen Voutev, Richard Mann .  2017.   Bxb1 phage recombinase assists genome engineering in Drosophila melanogaster.. Biotechniques. 62 (1) :37-38 ▶ Go to Pubmed
Marta Sanchez-Martin, Adolfo Ferrando .  2017.   The NOTCH1-MYC highway towards T-cell acute lymphoblastic leukemia.. Blood. ▶ Go to Pubmed
Mary Boland, Konrad Karczewski, Nicholas Tatonetti .  2017.   Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing.. PLoS Comput Biol. 13 (1) :e1005278 ▶ Go to Pubmed
Rivkah Rogawski, Ivan Sergeyev V, Yongjun Li, Maria Ottaviani, Virginia Cornish, Ann McDermott .  2017.   Dynamic Nuclear Polarization Signal Enhancement with High-Affinity Biradical Tags.. J Phys Chem B. ▶ Go to Pubmed
Anne-Catrin Uhlemann, Paul McAdam, Sean Sullivan, Justin Knox, Hossein Khiabanian, Raul Rabadan, Peter Davies, Ross Fitzgerald, Franklin Lowy .  2017.   Evolutionary Dynamics of Pandemic Methicillin-Sensitive Staphylococcus aureus ST398 and Its International Spread via Routes of Human Migration.. MBio. 8 (1) ▶ Go to Pubmed
Jimmy Liu, Yaniv Erlich, Joseph Pickrell .  2017.   Case-control association mapping by proxy using family history of disease.. Nat Genet. ▶ Go to Pubmed
Tomasz Owczarek, Takashi Kobayashi, Ricardo Ramirez, Lijie Rong, Anna Puzio-Kuter, Gopa Iyer, Min Teo, Francisco Sanchez-Vega, Jingqiang Wang, Nikolaus Schultz, Tian Zheng, David Solit, Hikmat Al-Ahmadie, Cory Abate-Shen .  2017.   ARF confers a context-dependent response to chemotherapy in muscle invasive bladder cancer.. Cancer Res. ▶ Go to Pubmed
Nicolas Christoforou, Syandan Chakraborty, Robert Kirkton, Andrew Adler, Russell Addis, Kam Leong .  2017.   Core Transcription Factors, MicroRNAs, and Small Molecules Drive Transdifferentiation of Human Fibroblasts Towards The Cardiac Cell Lineage.. Sci Rep. 7 :40285 ▶ Go to Pubmed
Esther Serrano-Saiz, Meital Oren-Suissa, Emily Bayer, Oliver Hobert .  2017.   Sexually Dimorphic Differentiation of a C. elegans Hub Neuron Is Cell Autonomously Controlled by a Conserved Transcription Factor.. Curr Biol. ▶ Go to Pubmed
Francesco Abate, Ana da Silva-Almeida, Sakellarios Zairis, Javier Robles-Valero, Lucile Couronné, Hossein Khiabanian, Aidan Quinn, Mi-Yeon Kim, Maria Laginestra, Christine Kim, Danilo Fiore, Govind Bhagat, Miguel Piris, Elias Campo, Izidore Lossos, Olivier Bernard, Giorgio Inghirami, Stefano Pileri, Xosé Bustelo, Raul Rabadan, Adolfo Ferrando, Teresa Palomero .  2017.   Activating mutations and translocations in the guanine exchange factor VAV1 in peripheral T-cell lymphomas.. Proc Natl Acad Sci U S A. ▶ Go to Pubmed
Kai Wang, Kam Leong, Yong Yang .  2016.   Expanding Nanopatterned Substrates Using Stitch Technique for Nanotopographical Modulation of Cell Behavior.. J Vis Exp. (118) ▶ Go to Pubmed
Sze Kerk, Paschalis Kratsios, Michael Hart, Romulo Mourao, Oliver Hobert .  2017.   Diversification of C. elegans Motor Neuron Identity via Selective Effector Gene Repression.. Neuron. 93 (1) :80-98 ▶ Go to Pubmed
Jaewoo Lee, Jennifer Jackman, Jean Kwun, Miriam Manook, Angelo Moreno, Eric Elster, Allan Kirk, Kam Leong, Bruce Sullenger .  2016.   Nucleic acid scavenging microfiber mesh inhibits trauma-induced inflammation and thrombosis.. Biomaterials. 120 :94-102 ▶ Go to Pubmed
Paola Nicoletti, Guruprasad Aithal, Einar Bjornsson, Raul Andrade, Ashley Sawle, Marco Arrese, Huiman Barnhart, Emmanuelle Bondon-Guitton, Paul Hayashi, Fernando Bessone, Alfonso Carvajal, Ingolf Cascorbi, Elizabeth Cirulli, Naga Chalasani, Anita Conforti, Sally Coulthard, Mark Daly, Christopher Day, John Dillon, Robert Fontana, Jane Grove, Pär Hallberg, Nelia Hernández, Luisa Ibáñez, Gerd Kullak-Ublick, Tarja Laitinen, Dominique Larrey, Isabel Lucena, Anke van der Zee, Jennifer Martin, Mariam Molokhia, Munir Pirmohamed, Elizabeth Powell, Shengying Qin, Jose Serrano, Camilla Stephens, Andrew Stolz, Mia Wadelius, Paul Watkins, Aris Floratos, Yufeng Shen, Matthew Nelson, Thomas Urban, Ann Daly .  2017.   Association of Liver Injury From Specific Drugs, or Groups of Drugs, With Polymorphisms in HLA and Other Genes in a Genome-Wide Association Study.. Gastroenterology. 152 (5) :1078-1089 ▶ Go to Pubmed
Katherine Xu, Paul Rosenstiel, Neal Paragas, Christian Hinze, Xiaobo Gao, Tian Shen, Max Werth, Catherine Forster, Rong Deng, Efrat Bruck, Roger Boles, Alexandra Tornato, Tejashree Gopal, Madison Jones, Justin Konig, Jacob Stauber, Vivette D'Agati, Hediye Erdjument-Bromage, Subodh Saggi, Gebhard Wagener, Kai Schmidt-Ott, Nicholas Tatonetti, Paul Tempst, Juan Oliver, Paolo Guarnieri, Jonathan Barasch .  2016.   Unique Transcriptional Programs Identify Subtypes of AKI.. J Am Soc Nephrol. ▶ Go to Pubmed
Joris van Arensbergen, Vincent FitzPatrick, Marcel de Haas, Ludo Pagie, Jasper Sluimer, Harmen Bussemaker, Bas van Steensel .  2016.   Genome-wide mapping of autonomous promoter activity in human cells.. Nat Biotechnol. ▶ Go to Pubmed
Eric Kelsic, Hattie Chung, Niv Cohen, Jimin Park, Harris Wang, Roy Kishony .  2016.   RNA Structural Determinants of Optimal Codons Revealed by MAGE-Seq.. Cell Syst. 3 (6) :563-571.e6 ▶ Go to Pubmed
Arjun Manrai, Chirag Patel, Nils Gehlenborg, Nicholas Tatonetti, John Ioannidis, Isaac Kohane .  2016.   METHODS TO ENHANCE THE REPRODUCIBILITY OF PRECISION MEDICINE.. Pac Symp Biocomput. 21 :180-182 ▶ Go to Pubmed
Zeynep Koşaloğlu, Inka Zörnig, Niels Halama, Iris Kaiser, Ivo Buchhalter, Niels Grabe, Roland Eils, Matthias Schlesner, Andrea Califano, Dirk Jäger .  2016.   Identification of immunotherapeutic targets by genomic profiling of rectal NET metastases.. Oncoimmunology. 5 (11) :e1213931 ▶ Go to Pubmed
Abdulkadir Elmas, Tai-Hsien Yang, Xiaodong Wang, Dimitris Anastassiou .  2016.   Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants.. PLoS One. 11 (12) :e0167994 ▶ Go to Pubmed
Andrea Califano, Mariano Alvarez .  2016.   The recurrent architecture of tumour initiation, progression and drug sensitivity.. Nat Rev Cancer. ▶ Go to Pubmed
Victoria Stockman, Lila Ghamsari, Gorka Lasso, Barry Honig, Sagi Shapira, Harris Wang .  2016.   A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions.. PLoS One. 11 (12) :e0167617 ▶ Go to Pubmed
Akshata Udyavar, David Wooten, Megan Hoeksema, Mukesh Bansal, Andrea Califano, Lourdes Estrada, Santiago Schnell, Jonathan Irish, Pierre Massion, Vito Quaranta .  2016.   Novel hybrid phenotype revealed in Small Cell Lung Cancer by a transcription factor network model that can explain tumor heterogeneity.. Cancer Res. ▶ Go to Pubmed
Akshata Udyavar, David Wooten, Megan Hoeksema, Mukesh Bansal, Andrea Califano, Lourdes Estrada, Santiago Schnell, Jonathan Irish, Pierre Massion, Vito Quaranta .  2016.   Novel hybrid phenotype revealed in Small Cell Lung Cancer by a transcription factor network model that can explain tumor heterogeneity.. Cancer Res. ▶ Go to Pubmed
Daniel Rosenbloom, Pablo Camara, Tim Chu, Raul Rabadan .  2016.   Evolutionary scalpels for dissecting tumor ecosystems.. Biochim Biophys Acta. ▶ Go to Pubmed
Anthony Clark, Tatyana Gindin, Baoshan Zhang, Lingle Wang, Robert Abel, Colleen Murret, Fang Xu, Amy Bao, Nina Lu, Tongqing Zhou, Peter Kwong, Lawrence Shapiro, Barry Honig, Richard Friesner .  2016.   Free Energy Perturbation Calculation of Relative Binding Free energy between Broadly Neutralizing Antibodies and the gp120 Glycoprotein of HIV-1.. J Mol Biol. ▶ Go to Pubmed
Khader Shameer, Kipp Johnson, Alexandre Yahi, Riccardo Miotto, L Li, Doran Ricks, Jebakumar Jebakaran, Patricia Kovatch, Partho Sengupta, Sengupta Gelijns, Alan Moskovitz, Bruce Darrow, David David, Andrew Kasarskis, Nicholas Tatonetti, Sean Pinney, Joel Dudley .  2016.   Predictive modelling of hospital readmission rates using electronic medical record-wide machine learning: a case-study using Mount Sinai heart failure cohort. Pac Symp Biocomput. 22 :276-287 ▶ Go to Pubmed
Konrad Karczewski, Nicholas Tatonetti, Arjun Manrai, Chirag Patel, Titus Brown, John Ioannidis .  2016.   Methods to ensure the reproducibility of biomedical research. Pac Symp Biocomput. 22 :117-119 ▶ Go to Pubmed
Rachel Melamed, Iraz Aydin, Geena Rajan, Robert Phelps, David Silvers, Kevin Emmett, Georg Brunner, Raul Rabadan, Julide Celebi .  2016.   Genomic Characterization of Dysplastic Nevi Unveils Implications for Diagnosis of Melanoma.. J Invest Dermatol. ▶ Go to Pubmed
Oliver Hobert, Lori Glenwinkel, John White .  2016.   Revisiting Neuronal Cell Type Classification in Caenorhabditis elegans.. Curr Biol. 26 (22) :R1197-R1203 ▶ Go to Pubmed
Sarah Kim-Hellmuth, Tuuli Lappalainen .  2016.   Concerted Genetic Function in Blood Traits.. Cell. 167 (5) :1167-1169 ▶ Go to Pubmed
Chaolin Zhang, Yufeng Shen .  2016.   A Cell Type-Specific Expression Signature Predicts Haploinsufficient Autism-Susceptibility Genes.. Hum Mutat. ▶ Go to Pubmed
Jinghe Huang, Byong Kang, Elise Ishida, Tongqing Zhou, Trevor Griesman, Zizhang Sheng, Fan Wu, Nicole Doria-Rose, Baoshan Zhang, Krisha McKee, Sijy O'Dell, Gwo-Yu Chuang, Aliaksandr Druz, Ivelin Georgiev, Chaim Schramm, Anqi Zheng, Gordon Joyce, Mangaiarkarasi Asokan, Amy Ransier, Sam Darko, Stephen Migueles, Robert Bailer, Mark Louder, Munir Alam, Robert Parks, Garnett Kelsoe, Tarra Von Holle, Barton Haynes, Daniel Douek, Vanessa Hirsch, Michael Seaman, Lawrence Shapiro, John Mascola, Peter Kwong, Mark Connors .  2016.   Identification of a CD4-Binding-Site Antibody to HIV that Evolved Near-Pan Neutralization Breadth.. Immunity. 45 (5) :1108-1121 ▶ Go to Pubmed
Filemon Cruz, Daniel Diolaiti, Andrew Turk, Allison Rainey, Alberto Ambesi-Impiombato, Stuart Andrews, Mahesh Mansukhani, Peter Nagy, Mariano Alvarez, Andrea Califano, Farhad Forouhar, Beata Modzelewski, Chelsey Mitchell, Darrell Yamashiro, Lianna Marks, Julia Bender, Andrew Kung .  2016.   A case study of an integrative genomic and experimental therapeutic approach for rare tumors: identification of vulnerabilities in a pediatric poorly differentiated carcinoma.. Genome Med. 8 (1) :116 ▶ Go to Pubmed
Ankeeta Shah, Yingzhi Qian, Sebastien Weyn-Vanhentenryck, Chaolin Zhang .  2016.   CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data.. Bioinformatics. ▶ Go to Pubmed
Weiqian Jiang, Mingqiang Li, Zaozao Chen, Kam Leong .  2016.   Cell-laden microfluidic microgels for tissue regeneration.. Lab Chip. 16 (23) :4482-4506 ▶ Go to Pubmed
Changchun Deng, Mark Lipstein, Luigi Scotto, Xavier Serrano, Michael Mangone, Shirong Li, Jeremie Vendome, Yun Hao, Xiaoming Xu, Shi-Xian Deng, Ronald Realubit, Nicholas Tatonetti, Charles Karan, Suzanne Lentzsch, David Fruman, Barry Honig, Donald Landry, Owen O'Connor .  2016.   Silencing c-Myc translation as a therapeutic strategy through targeting PI3K delta and CK1 epsilon in hematological malignancies.. Blood. ▶ Go to Pubmed
Kerry Goodman, Rotem Rubinstein, Chan Thu, Seetha Mannepalli, Fabiana Bahna, Goran Ahlsen, Chelsea Rittenhouse, Tom Maniatis, Barry Honig, Lawrence Shapiro .  2016.   γ-Protocadherin structural diversity and functional implications.. Elife. 5 ▶ Go to Pubmed
José Garzón, Lei Deng, Diana Murray, Sagi Shapira, Donald Petrey, Barry Honig .  2016.   A computational interactome and functional annotation for the human proteome.. Elife. 5 ▶ Go to Pubmed
Priya Moorjani, Ziyue Gao, Molly Przeworski .  2016.   Human Germline Mutation and the Erratic Evolutionary Clock.. PLoS Biol. 14 (10) :e2000744 ▶ Go to Pubmed
Yuval Simons, Guy Sella .  2016.   The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives.. Curr Opin Genet Dev. 41 :150-158 ▶ Go to Pubmed
Jennifer Jackman, Hemraj Juwarker, Luke Poveromo, Howard Levinson, Kam Leong, Bruce Sullenger .  2016.   Polycationic Nanofibers for Nucleic Acid Scavenging.. Biomacromolecules. ▶ Go to Pubmed
Marie Gendrel, Emily Atlas, Oliver Hobert .  2016.   A cellular and regulatory map of the GABAergic nervous system of C. elegans.. Elife. 5 ▶ Go to Pubmed
Sheng-Han Kuo, Chi-Ying Lin, Jie Wang, Peter Sims, Ming-Kai Pan, Jyun-You Liou, Danielle Lee, William Tate, Geoffrey Kelly, Elan Louis, Phyllis Faust .  2016.   Climbing fiber-Purkinje cell synaptic pathology in tremor and cerebellar degenerative diseases.. Acta Neuropathol. ▶ Go to Pubmed
Jinzhou Yuan, Peter Sims .  2016.   An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq.. Sci Rep. 6 :33883 ▶ Go to Pubmed
David McKean, Jason Homsy, Hiroko Wakimoto, Neil Patel, Joshua Gorham, Steven DePalma, James Ware, Samir Zaidi, Wenji Ma, Nihir Patel, Richard Lifton, Wendy Chung, Richard Kim, Yufeng Shen, Martina Brueckner, Elizabeth Goldmuntz, Andrew Sharp, Christine Seidman, Bruce Gelb, J Seidman .  2016.   Loss of RNA expression and allele-specific expression associated with congenital heart disease.. Nat Commun. 7 :12824 ▶ Go to Pubmed
Koichi Oshima, Hossein Khiabanian, Ana da Silva-Almeida, Gannie Tzoneva, Francesco Abate, Alberto Ambesi-Impiombato, Marta Sanchez-Martin, Zachary Carpenter, Alex Penson, Arianne Perez-Garcia, Cornelia Eckert, Concepción Nicolas, Milagros Balbin, Maria Sulis, Motohiro Kato, Katsuyoshi Koh, Maddalena Paganin, Giuseppe Basso, Julie Gastier-Foster, Meenakshi Devidas, Mignon Loh, Renate Kirschner-Schwabe, Teresa Palomero, Raul Rabadan, Adolfo Ferrando .  2016.   Mutational landscape, clonal evolution patterns, and role of RAS mutations in relapsed acute lymphoblastic leukemia.. Proc Natl Acad Sci U S A. ▶ Go to Pubmed
Kerry Goodman, Masahito Yamagata, Xiangshu Jin, Seetha Mannepalli, Phinikoula Katsamba, Goran Ahlsen, Alina Sergeeva, Barry Honig, Joshua Sanes, Lawrence Shapiro .  2016.   Molecular basis of sidekick-mediated cell-cell adhesion and specificity.. Elife. 5 ▶ Go to Pubmed
Donglai Wang, Ning Kon, Gorka Lasso, Le Jiang, Wenchuan Leng, Wei-Guo Zhu, Jun Qin, Barry Honig, Wei Gu .  2016.   Acetylation-regulated interaction between p53 and SET reveals a widespread regulatory mode.. Nature. ▶ Go to Pubmed
Li Li, Mary Boland, Riccardo Miotto, Nicholas Tatonetti, Joel Dudley .  2016.   Replicating Cardiovascular Condition-Birth Month Associations.. Sci Rep. 6 :33166 ▶ Go to Pubmed
Omid Tavana, Dawei Li, Chao Dai, Gonzalo Lopez, Debarshi Banerjee, Ning Kon, Chao Chen, Andrea Califano, Darrell Yamashiro, Hongbin Sun, Wei Gu .  2016.   HAUSP deubiquitinates and stabilizes N-Myc in neuroblastoma.. Nat Med. ▶ Go to Pubmed
Pedro Ferreira, Martin Oti, Matthias Barann, Thomas Wieland, Suzana Ezquina, Marc Friedländer, Manuel Rivas, Anna Esteve-Codina, Geuvadis consortium, Philip Rosenstiel, Tim Strom, Tuuli Lappalainen, Roderic Guigo, Michael Sammeth .  2016.   Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing.. Sci Rep. 6 :32406 ▶ Go to Pubmed
Ming Tian, Cheng Cheng, Xuejun Chen, Hongying Duan, Hwei-Ling Cheng, Mai Dao, Zizhang Sheng, Michael Kimble, Lingshu Wang, Sherry Lin, Stephen Schmidt, Zhou Du, Gordon Joyce, Yiwei Chen, Brandon DeKosky, Yimin Chen, Erica Normandin, Elizabeth Cantor, Rita Chen, Nicole Doria-Rose, Yi Zhang, Wei Shi, Wing-Pui Kong, Misook Choe, Amy Henry, Farida Laboune, Ivelin Georgiev, Pei-Yi Huang, Suvi Jain, Andrew McGuire, Eric Georgeson, Sergey Menis, Daniel Douek, William Schief, Leonidas Stamatatos, Peter Kwong, Lawrence Shapiro, Barton Haynes, John Mascola, Frederick Alt .  2016.   Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires.. Cell. 166 (6) :1471-1484.e18 ▶ Go to Pubmed
Jared Mayers, Margaret Torrence, Laura Danai V, Thales Papagiannakopoulos, Shawn Davidson, Matthew Bauer, Allison Lau, Brian Ji, Purushottam Dixit, Aaron Hosios, Alexander Muir, Christopher Chin, Elizaveta Freinkman, Tyler Jacks, Brian Wolpin, Dennis Vitkup, Matthew Heiden .  2016.   Tissue of origin dictates branched-chain amino acid metabolism in mutant Kras-driven cancers.. Science. 353 (6304) :1161-5 ▶ Go to Pubmed
Stephane Castel, Pejman Mohammadi, Wendy Chung, Yufeng Shen, Tuuli Lappalainen .  2016.   Rare variant phasing and haplotypic expression from RNA sequencing with phASER.. Nat Commun. 7 :12817 ▶ Go to Pubmed
Priya Moorjani, Carlos Amorim, Peter Arndt, Molly Przeworski .  2016.   Variation in the molecular clock of primates.. Proc Natl Acad Sci U S A. ▶ Go to Pubmed
Ricky Joshi, Paras Garg, Noah Zaitlen, Tuuli Lappalainen, Corey Watson, Nidha Azam, Daniel Ho, Xin Li, Stylianos Antonarakis, Han Brunner, Karin Buiting, Sau Cheung, Bradford Coffee, Thomas Eggermann, David Francis, Joep Geraedts, Giorgio Gimelli, Samuel Jacobson, Cedric Le Caignec, Nicole de Leeuw, Thomas Liehr, Deborah Mackay, Stephen Montgomery, Alistair Pagnamenta, Peter Papenhausen, David Robinson, Claudia Ruivenkamp, Charles Schwartz, Bernhard Steiner, David Stevenson, Urvashi Surti, Thomas Wassink, Andrew Sharp .  2016.   DNA Methylation Profiling of Uniparental Disomy Subjects Provides a Map of Parental Epigenetic Bias in the Human Genome.. Am J Hum Genet. 99 (3) :555-66 ▶ Go to Pubmed
Yunting Chen, Oliver Clarke, Jonathan Kim, Sean Stowe, Youn-Kyung Kim, Zahra Assur, Michael Cavalier, Raquel Godoy-Ruiz, Desiree von Alpen, Chiara Manzini, William Blaner, Joachim Frank, Loredana Quadro, David Weber, Lawrence Shapiro, Wayne Hendrickson, Filippo Mancia .  2016.   Structure of the STRA6 receptor for retinol uptake.. Science. 353 (6302) ▶ Go to Pubmed
Robert Reid, Xing Du, Ivana Sunjevaric, Vinayak Rayannavar, John Dittmar, Eric Bryant, Matthew Maurer, Rodney Rothstein .  2016.   A Yeast Synthetic Dosage Lethal Screen Identifies a Conserved Interaction between PLK1 and CKS1B Affecting Cancer Cell Viability.. Genetics. ▶ Go to Pubmed
Jennifer Bain, Megan Cho, Aida Telegrafi, Ashley Wilson, Susan Brooks, Christina Botti, Gordon Gowans, Leigh Autullo, Vidya Krishnamurthy, Marcia Willing, Tomi Toler, Bruria Ben-Zev, Orly Elpeleg, Yufeng Shen, Kyle Retterer, Kristin Monaghan, Wendy Chung .  2016.   Variants in HNRNPH2 on the X Chromosome Are Associated with a Neurodevelopmental Disorder in Females.. Am J Hum Genet. ▶ Go to Pubmed
Eyal Elyashiv, Shmuel Sattath, Tina Hu, Alon Strutsovsky, Graham McVicker, Peter Andolfatto, Graham Coop, Guy Sella .  2016.   A Genomic Map of the Effects of Linked Selection in Drosophila.. PLoS Genet. 12 (8) :e1006130 ▶ Go to Pubmed
Pablo Camara, Arnold Levine, Raul Rabadan .  2016.   Inference of Ancestral Recombination Graphs through Topological Data Analysis.. PLoS Comput Biol. 12 (8) :e1005071 ▶ Go to Pubmed
Joshua Black, Andrew Adler, Hong-Gang Wang, Anthony D'Ippolito, Hunter Hutchinson, Timothy Reddy, Geoffrey Pitt, Kam Leong, Charles Gersbach .  2016.   Targeted Epigenetic Remodeling of Endogenous Loci by CRISPR/Cas9-Based Transcriptional Activators Directly Converts Fibroblasts to Neuronal Cells.. Cell Stem Cell. ▶ Go to Pubmed
Yun Hao, Nicholas Tatonetti .  2016.   Predicting G Protein-Coupled Receptor Downstream Signaling by Tissue Expression.. Bioinformatics. ▶ Go to Pubmed
Gordon Joyce, Adam Wheatley, Paul Thomas V, Gwo-Yu Chuang, Cinque Soto, Robert Bailer, Aliaksandr Druz, Ivelin Georgiev, Rebecca Gillespie, Masaru Kanekiyo, Wing-Pui Kong, Kwanyee Leung, Sandeep Narpala, Madhu Prabhakaran, Eun Yang, Baoshan Zhang, Yi Zhang, Mangaiarkarasi Asokan, Jeffrey Boyington, Tatsiana Bylund, Sam Darko, Christopher Lees, Amy Ransier, Chen-Hsiang Shen, Lingshu Wang, James Whittle, Xueling Wu, Hadi Yassine, Celia Santos, Yumiko Matsuoka, Yaroslav Tsybovsky, Ulrich Baxa, NISC Program, James Mullikin, Kanta Subbarao, Daniel Douek, Barney Graham, Richard Koup, Julie Ledgerwood, Mario Roederer, Lawrence Shapiro, Peter Kwong, John Mascola, Adrian McDermott .  2016.   Vaccine-Induced Antibodies that Neutralize Group 1 and Group 2 Influenza A Viruses.. Cell. 166 (3) :609-23 ▶ Go to Pubmed
Laura Belver, Adolfo Ferrando .  2016.   The genetics and mechanisms of T cell acute lymphoblastic leukaemia.. Nat Rev Cancer. 16 (8) :494-507 ▶ Go to Pubmed
Jeremy Chang, Kayla Quinnies, Ronald Realubit, Charles Karan, Jacob Rand, Nicholas Tatonetti .  2016.   A novel, rapid method to compare the therapeutic windows of oral anticoagulants using the Hill coefficient.. Sci Rep. 6 :29387 ▶ Go to Pubmed
Robert Moskovitch, Hyunmi Choi, George Hripcsak, Nicholas Tatonetti .  2016.   Prognosis of Clinical Outcomes with Temporal Patterns and Experiences with One Class Feature Selection.. IEEE/ACM Trans Comput Biol Bioinform. ▶ Go to Pubmed
Timothy Olsen, Jing Zhu, Jinho Kim, Renjun Pei, Milan Stojanovic, Qiao Lin .  2016.   An Integrated Microfluidic SELEX Approach Using Combined Electrokinetic and Hydrodynamic Manipulation.. J Lab Autom. ▶ Go to Pubmed
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