Search Publications
Generation of pralatrexate resistant T-cell lymphoma lines reveals two patterns of acquired drug resistance that is overcome with epigenetic modifiers..
Genes Chromosomes Cancer.
59
(11)
:639-651
▶ Go to Pubmed
. 2020.
. 2020.
. 2020.
. 2020.
Analysis of monitoring data where butterflies fly year-round..
Ecol Appl.
30
(8)
:e02196
▶ Go to Pubmed
. 2020.
. 2020.
Genome and sequence determinants governing the expression of horizontally acquired DNA in bacteria..
The ISME journal.
14
(9)
:2347-2357
▶ Go to Pubmed
. 2020.
. 2020.
. 2021.
Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing..
Nat Microbiol.
5
(10)
:1192-1201
▶ Go to Pubmed
. 2020.
CD8 T-cell-Mediated Immunoediting Influences Genomic Evolution and Immune Evasion in Murine Gliomas..
Clin Cancer Res.
26
(16)
:4390-4401
▶ Go to Pubmed
. 2020.
Active surveillance documents rates of clinical care seeking due to respiratory illness..
Influenza Other Respir Viruses.
14
(5)
:499-506
▶ Go to Pubmed
. 2020.
. 2020.
DIP/Dpr interactions and the evolutionary design of specificity in protein families..
Nat Commun.
11
(1)
:2125
▶ Go to Pubmed
. 2020.
Pan-cancer analysis identifies mutations in that recapitulate mutant SF3B1 splicing dysregulation..
Proc Natl Acad Sci U S A.
117
(19)
:10305-10312
▶ Go to Pubmed
. 2020.
. 2020.
Macroecological dynamics of gut microbiota..
Nat Microbiol.
5
(5)
:768-775
▶ Go to Pubmed
. 2020.
Mutations in the RNA Splicing Factor SF3B1 Promote Tumorigenesis through MYC Stabilization..
Cancer Discov.
10
(6)
:806-821
▶ Go to Pubmed
. 2020.
HLA Typing from RNA Sequencing and Applications to Cancer..
Methods Mol Biol.
2120
:71-92
▶ Go to Pubmed
. 2020.
. 2020.
2DImpute: imputation in single-cell RNA-seq data from correlations in two dimensions..
Bioinformatics.
36
(11)
:3588-3589
▶ Go to Pubmed
. 2020.
Sensing Actin Dynamics through Adherens Junctions..
Cell Rep.
30
(8)
:2820-2833.e3
▶ Go to Pubmed
. 2020.
Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered δ-Protocadherins..
Cell Rep.
30
(8)
:2655-2671.e7
▶ Go to Pubmed
. 2020.
Characterizing Intra-Tumor Heterogeneity From Somatic Mutations Without Copy-Neutral Assumption..
IEEE/ACM Trans Comput Biol Bioinform.
18
(6)
:2271-2280
▶ Go to Pubmed
. 2021.
. 2020.
A meta-analysis of the accuracy of a neuroendocrine tumor mRNA genomic biomarker (NETest) in blood..
Ann Oncol.
31
(2)
:202-212
▶ Go to Pubmed
. 2020.
. 2020.
Recording mobile DNA in the gut microbiota using an Escherichia coli CRISPR-Cas spacer acquisition platform..
Nature communications.
11
(1)
:95
▶ Go to Pubmed
. 2020.
Scalable and cost-effective ribonuclease-based rRNA depletion for transcriptomics..
Nucleic acids research.
48
(4)
:e20
▶ Go to Pubmed
. 2020.
. 2020.
Genomic and Phenotypic Characterization of a Broad Panel of Patient-Derived Xenografts Reflects the Diversity of Glioblastoma..
Clin Cancer Res.
26
(5)
:1094-1104
▶ Go to Pubmed
. 2020.
Gene expression analysis of the cerebellar cortex in essential tremor..
Neuroscience letters.
721
:134540
▶ Go to Pubmed
. 2020.
Quantifying spatiotemporal variability and noise in absolute microbiota abundances using replicate sampling..
Nat Methods.
16
(8)
:731-736
▶ Go to Pubmed
. 2019.
Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes..
Annu Rev Cell Dev Biol.
35
:357-379
▶ Go to Pubmed
. 2019.
Whole-animal connectomes of both Caenorhabditis elegans sexes..
Nature.
571
(7763)
:63-71
▶ Go to Pubmed
. 2019.
Somatic mutations and cell identity linked by Genotyping of Transcriptomes..
Nature.
571
(7765)
:355-360
▶ Go to Pubmed
. 2019.
Inference of Population Structure from Time-Series Genotype Data..
Am J Hum Genet.
105
(2)
:317-333
▶ Go to Pubmed
. 2019.
High-throughput identification of human SNPs affecting regulatory element activity..
Nat Genet.
51
(7)
:1160-1169
▶ Go to Pubmed
. 2019.
Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose..
BMC Mol Cell Biol.
20
(1)
:20
▶ Go to Pubmed
. 2019.
Modeling RNA-Binding Protein Specificity In Vivo by Precisely Registering Protein-RNA Crosslink Sites..
Mol Cell.
74
(6)
:1189-1204.e6
▶ Go to Pubmed
. 2019.
. 2019.
. 2019.
FEAST: fast expectation-maximization for microbial source tracking..
Nat Methods.
16
(7)
:627-632
▶ Go to Pubmed
. 2019.
arcasHLA: high resolution HLA typing from RNAseq..
Bioinformatics.
▶ Go to Pubmed
. 2019.
NestinNG2 Cells Form a Reserve Stem Cell Population in the Mouse Prostate..
Stem Cell Reports.
12
(6)
:1201-1211
▶ Go to Pubmed
. 2019.
Dissecting lung development and fibrosis at single-cell resolution..
Genome Med.
11
(1)
:33
▶ Go to Pubmed
. 2019.
. 2019.
Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization..
Cell.
177
(7)
:1781-1796.e25
▶ Go to Pubmed
. 2019.
Clinical Data: Sources and Types, Regulatory Constraints, Applications..
Clin Transl Sci.
12
(4)
:329-333
▶ Go to Pubmed
. 2019.
Shared Genetic Risk Factors Across Carbamazepine-Induced Hypersensitivity Reactions..
Clin Pharmacol Ther.
106
(5)
:1028-1036
▶ Go to Pubmed
. 2019.
Shared Genetic Risk Factors Across Carbamazepine-Induced Hypersensitivity Reactions..
Clinical pharmacology and therapeutics.
106
(5)
:1028-1036
▶ Go to Pubmed
. 2019.
. 2019.
Overlooked roles of DNA damage and maternal age in generating human germline mutations..
Proc Natl Acad Sci U S A.
116
(19)
:9491-9500
▶ Go to Pubmed
. 2019.
. 2019.
. 2019.
Complete Regression of Advanced Pancreatic Ductal Adenocarcinomas upon Combined Inhibition of EGFR and C-RAF..
Cancer Cell.
35
(4)
:573-587.e6
▶ Go to Pubmed
. 2019.
Structural variation in the gut microbiome associates with host health..
Nature.
568
(7750)
:43-48
▶ Go to Pubmed
. 2019.
Widespread Alterations in Translation Elongation in the Brain of Juvenile Fmr1 Knockout Mice..
Cell Rep.
26
(12)
:3313-3322.e5
▶ Go to Pubmed
. 2019.
. 2019.
. 2019.
The development and assembly of the Drosophila adult ventral nerve cord..
Curr Opin Neurobiol.
56
:135-143
▶ Go to Pubmed
. 2019.
Sex-specific pheromone responses in ..
EMBO Rep.
20
(3)
▶ Go to Pubmed
. 2019.
Longitudinal active sampling for respiratory viral infections across age groups..
Influenza Other Respir Viruses.
▶ Go to Pubmed
. 2019.
Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma..
Nat Med.
25
(3)
:462-469
▶ Go to Pubmed
. 2019.
Interrogation of Eukaryotic Stop Codon Readthrough Signals by in Vitro RNA Selection..
Biochemistry.
58
(8)
:1167-1178
▶ Go to Pubmed
. 2019.
Plasticity of the Electrical Connectome of C. elegans..
Cell.
176
(5)
:1174-1189.e16
▶ Go to Pubmed
. 2019.
. 2019.
. 2019.
Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways..
Microb Cell.
6
(1)
:1-64
▶ Go to Pubmed
. 2019.
. 2019.
SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing..
Genome Biol.
19
(1)
:227
▶ Go to Pubmed
. 2018.
. 2018.
. 2018.
Autoencoding Topographic Factors..
J Comput Biol.
▶ Go to Pubmed
. 2018.
NSD2 is a conserved driver of metastatic prostate cancer progression..
Nat Commun.
9
(1)
:5201
▶ Go to Pubmed
. 2018.
A scalable peptide-GPCR language for engineering multicellular communication..
Nat Commun.
9
(1)
:5057
▶ Go to Pubmed
. 2018.
. 2018.
. 2018.
. 2018.
Interactions between the Ig-Superfamily Proteins DIP-α and Dpr6/10 Regulate Assembly of Neural Circuits..
Neuron.
100
(6)
:1369-1384.e6
▶ Go to Pubmed
. 2018.
. 2018.
. 2018.
. 2018.
DAZL Regulates Germ Cell Survival through a Network of PolyA-Proximal mRNA Interactions..
Cell Rep.
25
(5)
:1225-1240.e6
▶ Go to Pubmed
. 2018.
Cationic nanoparticle as an inhibitor of cell-free DNA-induced inflammation..
Nat Commun.
9
(1)
:4291
▶ Go to Pubmed
. 2018.
Identity inference of genomic data using long-range familial searches..
Science.
362
(6415)
:690-694
▶ Go to Pubmed
. 2018.
Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow..
Proc Natl Acad Sci U S A.
115
(43)
:11096-11101
▶ Go to Pubmed
. 2018.
Nervous System Development: Flies and Worms Converging on Neuron Identity Control..
Curr Biol.
28
(19)
:R1154-R1157
▶ Go to Pubmed
. 2018.
Prostate Stem Cells and Cancer Stem Cells..
Cold Spring Harb Perspect Med.
▶ Go to Pubmed
. 2018.
Cooperation of loss of and inflammation in prostate cancer initiation..
Dis Model Mech.
11
(11)
▶ Go to Pubmed
. 2018.
Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy..
Nat Genet.
50
(10)
:1399-1411
▶ Go to Pubmed
. 2018.
Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining..
BMC Med Inform Decis Mak.
18
(Suppl 3)
:79
▶ Go to Pubmed
. 2018.
DNA-based memory devices for recording cellular events..
Nature reviews. Genetics.
19
(11)
:718-732
▶ Go to Pubmed
. 2018.
. 2018.
Aptamer-field-effect transistors overcome Debye length limitations for small-molecule sensing..
Science.
362
(6412)
:319-324
▶ Go to Pubmed
. 2018.
. 2018.
Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites..
Cell Rep.
24
(9)
:2221-2230
▶ Go to Pubmed
. 2018.
Past experience shapes sexually dimorphic neuronal wiring through monoaminergic signalling..
Nature.
561
(7721)
:117-121
▶ Go to Pubmed
. 2018.
The discovery of Bombali virus adds further support for bats as hosts of ebolaviruses..
Nat Microbiol.
3
(10)
:1084-1089
▶ Go to Pubmed
. 2018.
cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg..
PLoS Genet.
14
(8)
:e1007568
▶ Go to Pubmed
. 2018.